Thomas M. Hamm

Diplom Biologe (t.o.)


Department for Computer Science
Center for Bioinformatics Tübingen (ZBIT)
Sand 14 ・ 2nd floor ・ Office C321

 +49 7071 29-70460

Research interests

  • Biology: human biology; microbiology

  • Systems biology: quantitative dynamic modeling of biological processes; constraint-based modeling of metabolic networks

  • Software development: developing software to answer questions in systems biology (e.g. JSBML)

Current research projects

Conceptual Design of a German infection-related OMICS Data Exchange (GirOD) Platform


Thomaseth, Caterina, Patrick Weber, Thomas Hamm, Kenji Kashima, and Nicole Radde. 2013. “Modeling Sphingomyelin Synthase 1 Driven Reaction at the Golgi Apparatus Can Explain Data by Inclusion of a Positive Feedback Mechanism.” Journal of Theoretical Biology 337 (November): 174–80.

Knoll, Michael, Thomas M. Hamm, Florian Wagner, Virginia Martinez, and Jürgen Pleiss. 2009. “The PHA Depolymerase Engineering Database: A Systematic Analysis Tool for the Diverse Family of Polyhydroxyalkanoate (PHA) Depolymerases.” BMC Bioinformatics 10 (1): 89.