Theses

In progress

Reconstruction von Moraxella catarrhalis RH4

Research project

Visual analysis of clinical multi-omics data in biological networks

Bachelor thesis

Modelling and Visualization of specific resistance mechanisms in Pseudomonas aeruginosa

Bachelor thesis

Examinee: Eike Pertuch
Mentor: Alina Renz

Problem: PDF

Expanded genome-scale model of Haemophilus influenzae

Bachelor thesis

Examinee: Niklas Henle
Mentor: Dr. Reihaneh Mostolizadeh

Problem: PDF

Completed theses

2019

Development of a plugin for the Insilico framework for the visual analysis of simulations of biological systems

Bachelor thesis

Examinee: Mykola Zakharchuk

Problem: PDF

Defense:
June 17th 2019 at 2 p.m. c.t. in C118a

Development of a graphical editor for creating systems biology models with SBML

Bachelor thesis

Examinee: Robert Deibel

Problem: PDF

Defense:
March 1st 2019 at 4 p.m. c.t. in C215

2018

Modeling of potentially virulence-associated metabolic pathways in Pseudomonas aeruginosa PA14 and experimental verification

Master thesis

Examinee: Alina Renz

Problem: PDF

Defense:
December 19th 2018 at 10 a.m. c.t. in C215

Genome-scale metabolic network reconstruction of the pathogen Treponema pallidum ssp. pallidum

Master thesis

Examinee: Silvia Morini

Problem: PDF

Defense:
October 30th 2018 at 11 a.m. s.t. in A302

Development of an interactive graphical editor for systems biology models

Bachelor thesis

Examinee: Roman Schulte

Problem: PDF

Defense:
August 23rd 2018 at 2 p.m. c.t. in A104

Representation of ME-models in SBML

Master thesis

Examinee: Marc Alexander Voigt

Problem: PDF

Defense:
June 26th 2018 at 12 a.m. c.t. in C118a

Validation and Simulation of Qualitative Models

Bachelor thesis

Examinee: Lisa Falk

Problem: PDF

Defense:
May 17th 2018 at 2 p.m. c.t. in C215

2017

Dynamic visualization of metabolic networks

Bachelor thesis

Examinee: Lea F. Buchweitz

Defense:
September 28th 2017 at 2 p.m. c.t. in A104

Visualization of time-series data with Escher

Bachelor thesis

Examinee: Christoph Blessing

Problem: PDF

Defense:
September 28th 2017 at 2:45 p.m. in A104


2012

Extension of the SBMLsimulator by a module for flux balance analysis

Bachelor thesis

Examinee: Maike Aichele

Problem: PDF

Visual simulation of biochemical networks

Bachelor thesis

Examinee: Fabian Schwarzkopf

Problem: PDF

Automatic biomodel documentation

Bachelor thesis

Examinee: Mirjam Gutekunst

Problem: PDF

2011

Implementation of a flux balance analysis method in Java

Bachelor thesis

Examinee: Simon Schäfer

Problem: PDF

Computational Modeling of Biochemical Networks

Dissertation

Examinee: Andreas Dräger

Defense:
January 14th 2011 at 2:15 p.m. in A301

Awarding of the doctorate:
March 31st 2011

Available as a book from publisher Dr. Hut.

2009

Dynamics of reconstructed gene regulation networks

Bachelor thesis

Examinee: Sandra Nitschmann

Problem: PDF

Implementation of a stability analysis for biochemical networks

Bachelor thesis

Examinee: Alexander Dörr

Problem: PDF

Automated mathematical modeling of biochemical networks

Diploma thesis

Examinee: Michael Ziller

Problem: PDF

2008

Comparative analysis of the models on Biomodels.net

Diploma thesis

Examinee: Dieudonné M. Wouamba

Problem: PDF

Simulation of gene regulatory networks with JCell2

Diploma thesis

Examinee: Hannes Borch

Problem: PDF

Integration, visualization, and analysis of SNP data

Diploma thesis

Examinee: Gabrielle Doan

Problem: PDF

Comparison of JavaEvA and BioJava with respect to metabolic networks

Study project

Examinee: Susanne Merz

 

2007

Metabolic control analysis

Study project

Examinee: Michael Ziller

 

Automatic generation of kinetic equations from stoichiometries

Diploma theis

Examinee: Nadine Hassis

Problem: PDF

2005

Automatic and comparative analysis of bacterial genomes with focus on Ralstonia/Cupriavidus species and related proteobacteria

Diploma thesis

Examinee: Andreas Dräger

Defense: December 2005