Theses

In progress

Visual analysis of flux sampling simulations based on extracellular metabolomic measurements

Masterthese

Graphical editor for systems biology models

Research project

Reconstruction and Analysis of Staphylococcus epidermidis

Bachelor thesis

Examinee: Anastasiia Grekova
Mentor: Alina Renz

Problem: PDF

Reconstruction of Dolosigranulum pigrum

Research project

Examinee: Lina Widerspick
Mentor: Alina Renz

Problem: PDF

Optimized Layouting of Biological Networks for the Comparative Visual Analysis

Bachelor thesis

Derivation of gene-protein reaction rules

Bachelor thesis

Examinee: Manuel Dienert
Mentors: Jun.-Prof. Dr. Andreas Dräger

Problem: PDF

Completed theses

2019

Visual analysis of clinical multi-omics data in biological networks

Bachelor thesis

Examinee: Manuel O. Harke
Mentors: Jun.-Prof. Dr. Michael Krone,
Jun.-Prof. Dr. Andreas Dräger

Problem: PDF

Defense:
November 19th 2019 at 10:15 a.m. in C109

What makes a review helpful or funny?

Research project

Modelling and Visualization of specific resistance mechanisms in Pseudomonas aeruginosa

Bachelor thesis

Examinee: Eike Pertuch
Mentor: Alina Renz

Problem: PDF

Defense:
September 24th 2019 at 10:15 a.m. in A104

Reconstruction of Moraxella catarrhalis BBH18

Research project

Examinee: Pia Rautenstrauch
Mentors: Alina RenzJun.-Prof. Dr. Andreas Dräger

Problem: PDF

Defense:
September 10th 2019 at 10:45 a.m. in C118a

Expanded genome-scale model of Haemophilus influenzae

Bachelor thesis

Examinee: Niklas Henle
Mentor: Dr. Reihaneh Mostolizadeh

Problem: PDF

Defense:
September 10th 2019 at 10 a.m. c.t. in C118a

Development of a plugin for the Insilico framework for the visual analysis of simulations of biological systems

Bachelor thesis

Examinee: Mykola Zakharchuk

Problem: PDF

Defense:
June 17th 2019 at 2 p.m. c.t. in C118a

Development of a graphical editor for creating systems biology models with SBML

Bachelor thesis

Examinee: Robert Deibel

Problem: PDF

Defense:
March 1st 2019 at 4 p.m. c.t. in C215

2018

Modeling of potentially virulence-associated metabolic pathways in Pseudomonas aeruginosa PA14 and experimental verification

Master thesis

Examinee: Alina Renz

Problem: PDF

Defense:
December 19th 2018 at 10 a.m. c.t. in C215

Genome-scale metabolic network reconstruction of the pathogen Treponema pallidum ssp. pallidum

Master thesis

Examinee: Silvia Morini

Problem: PDF

Defense:
October 30th 2018 at 11 a.m. s.t. in A302

Development of an interactive graphical editor for systems biology models

Bachelor thesis

Examinee: Roman Schulte

Problem: PDF

Defense:
August 23rd 2018 at 2 p.m. c.t. in A104

Representation of ME-models in SBML

Master thesis

Examinee: Marc Alexander Voigt

Problem: PDF

Defense:
June 26th 2018 at 12 a.m. c.t. in C118a

Validation and Simulation of Qualitative Models

Bachelor thesis

Examinee: Lisa Falk

Problem: PDF

Defense:
May 17th 2018 at 2 p.m. c.t. in C215

2017

Dynamic visualization of metabolic networks

Bachelor thesis

Examinee: Lea F. Buchweitz

Defense:
September 28th 2017 at 2 p.m. c.t. in A104

Visualization of time-series data with Escher

Bachelor thesis

Examinee: Christoph Blessing

Problem: PDF

Defense:
September 28th 2017 at 2:45 p.m. in A104


2012

Extension of the SBMLsimulator by a module for flux balance analysis

Bachelor thesis

Examinee: Maike Aichele

Problem: PDF

Visual simulation of biochemical networks

Bachelor thesis

Examinee: Fabian Schwarzkopf

Problem: PDF

Automatic biomodel documentation

Bachelor thesis

Examinee: Mirjam Gutekunst

Problem: PDF

2011

Implementation of a flux balance analysis method in Java

Bachelor thesis

Examinee: Simon Schäfer

Problem: PDF

Computational Modeling of Biochemical Networks

Dissertation

Examinee: Andreas Dräger

Defense:
January 14th 2011 at 2:15 p.m. in A301

Awarding of the doctorate:
March 31st 2011

Available as a book from publisher Dr. Hut.

2009

Dynamics of reconstructed gene regulation networks

Bachelor thesis

Examinee: Sandra Nitschmann

Problem: PDF

Implementation of a stability analysis for biochemical networks

Bachelor thesis

Examinee: Alexander Dörr

Problem: PDF

Automated mathematical modeling of biochemical networks

Diploma thesis

Examinee: Michael Ziller

Problem: PDF

2008

Comparative analysis of the models on Biomodels.net

Diploma thesis

Examinee: Dieudonné M. Wouamba

Problem: PDF

Simulation of gene regulatory networks with JCell2

Diploma thesis

Examinee: Hannes Borch

Problem: PDF

Integration, visualization, and analysis of SNP data

Diploma thesis

Examinee: Gabrielle Doan

Problem: PDF

Comparison of JavaEvA and BioJava with respect to metabolic networks

Study project

Examinee: Susanne Merz

 

2007

Metabolic control analysis

Study project

Examinee: Michael Ziller

 

Automatic generation of kinetic equations from stoichiometries

Diploma theis

Examinee: Nadine Hassis

Problem: PDF

2005

Automatic and comparative analysis of bacterial genomes with focus on Ralstonia/Cupriavidus species and related proteobacteria

Diploma thesis

Examinee: Andreas Dräger

Defense: December 2005