Publications

Irvali D, Schlottmann F.P., Muralidara P., Nadelsson I., Wood N.E., Doncic A.T., and Ewald J.C. When yeast cells change their mind: Cell cycle Start is reversible under starvation (2022). EMBO Journal, e110321
D. Schlossarek, M. Luzarowski, E. M. Sokolowska, V. P. Thirumalaikumar, L. Dengler, L. Willmitzer, J. C. Ewald and A. Skirycz . Rewiring of the protein-protein-metabolite interactome during the diauxic shift in yeast. Cellular and Molecular Life Sciences 79 (11).(2022)
A. P. Cuny, F. P. Schlottmann, J. C. Ewald, S. Pelet, K. M. Schmoller, Live cell microscopy: From image to insight. Biophysics Reviews 3, 021302 (2022).

Irvali D, Schlottmann F.P., Muralidara P., Nadelsson I., Wood N.E., Doncic A.T., and Ewald J.C. When yeast cells change their mind: Cell cycle Start is reversible under Starvation, preprint on BioRxiv
M. Luzarowski, R. Vicente, ..., J.C. Ewald, A. Skirycz, Global mapping of protein–metabolite interactions in Saccharomyces cerevisiae reveals that Ser-Leu dipeptide regulates phosphoglycerate kinase activity. , Commun Biol 4, 181 (2021).
L.Dengler, M. Örd, L.M. Schwab, M.Loog, J.C. Ewald, Regulation of trehalase activity by multi-site phosphorylation and 14-3-3 interaction, Scientific Reports

L. Zhang, S. Winkler, F. Schlottmann, O.C. Kohlbacher, J. E. Elias, J.M. Skotheim, J.C. Ewald, Multiple layers of phospho-regulation coordinate metabolism and the cell cycle in budding yeast, Front. Cell Dev. Biol., 2019 https://doi.org/10.3389/fcell.2019.00338

M. Solaki, J.C. Ewald, Fueling the Cycle: CDKs in Carbon and Energy Metabolism. Front. Cell Dev. Biol., 2018. 6, 93. doi: 10.3389/fcell.2018.00093
J.C. Ewald, How yeast coordinates metabolism, growth and division. Current Opinion in Microbiology, 2018. 45: p. 1-7. https://doi.org/10.1016/j.mib.2017.12.012

J.C. Ewald, A.Kuehne, N. Zamboni and J. M. Skotheim (2016) "The yeast cyclin dependent kinase routes carbon fluxes to fuel cell cycle progression“. Mol. Cell, 62 (4):532-45 (highlighted in Faculty1000)

E.Peroza, J.C. Ewald, G. Parakkal, J.M. Skotheim and Nicola Zamboni (2015). "A genetically encoded FRET sensor reveals in vivo trehalose-6-phosphate dynamics.“ Anal Biochem,474, 1-7

J.C. Ewald, T. Matt and N. Zamboni (2013). "The integrated response of primary metabolites to gene deletions and the environment." Mol Biosyst 9(3): 440-446.

G.G. Zampar, A. Kummel, J. Ewald, S. Jol, B. Niebel, P. Picotti, R. Aebersold, U. Sauer, N. Zamboni and M. Heinemann (2013). "Temporal system-level organization of the switch from glycolytic to gluconeogenic operation in yeast." Mol Syst Biol 9: 651.

(Review) J.J. Turner, J.C. Ewald and J.M. Skotheim (2012). "Cell size control in yeast." Curr Biol 22(9): R350-359. (cited in Bruce Alberts „Molecular Biology of the Cell“ text book)

J.C. Ewald, S. Reich, S. Baumann, W.B. Frommer and N. Zamboni (2011). "Engineering genetically encoded nanosensors for real-time in vivo measurements of citrate concentrations." PLoS One 6(12):
C. Bermejo*, J.C. Ewald*, V. Lanquar*, A. Jones and W.B. Frommer (2011). "In vivo biochemistry – quantifying fluxes in individual cells or cultures of yeast." Biochem. Journ. 438(1): 1-10.

A. Kummel, J.C. Ewald, S.M. Fendt, S.J. Jol, P. Picotti, R. Aebersold, U. Sauer, N. Zamboni and M. Heinemann (2010). "Differential glucose repression in common yeast strains in response to HXK2 deletion." FEMS Yeast Res 10(3): 322-332.

A.B. Canelas, N. Harrison, A. Fazio, J. Zhang, J.P. Pitkanen, J. van den Brink, B.M. Bakker, L. Bogner, J. Bouwman, J.I. Castrillo, A. Cankorur, P. Chumnanpuen, P. Daran-Lapujade, D. Dikicioglu, K. van Eunen, J.C. Ewald, et al (2010). "Integrated multilaboratory systems biology reveals differences in protein metabolism between two reference yeast strains." Nat Commun 1: 145.

T. Hardiman, H. Meinhold, J. Hofmann, J.C. Ewald, M. Siemann-Herzberg and M. Reuss (2010). "Prediction of kinetic parameters from DNA-binding site sequences for modeling global transcription dynamics in Escherichia coli." Metab Eng 12(3): 196-211.

J.C. Ewald, S. Heux and N. Zamboni (2009). "High-throughput quantitative metabolomics: workflow for cultivation, quenching, and analysis of yeast in a multiwell format." Anal Chem 81(9): 3623-3629.

J.M. Buscher, D. Czernik, J.C. Ewald, U. Sauer and N. Zamboni (2009). "Cross-platform comparison of methods for quantitative metabolomics of primary metabolism." Anal Chem 81(6): 2135-2143.

T. Hardiman, J.C. Ewald, K. Lemuth, M. Reuss and M. Siemann-Herzberg (2008). "Quantification of rRNA in Escherichia coli using capillary gel electrophoresis with laser-induced fluorescence detection." Anal Biochem 374(1): 79-86.

T. Hardiman, V. Windeisen, J.C. Ewald, S. Zibek, P. Schlack, J. Rebell, M. Reuss and M. Siemann-Herzberg (2008). "In vitro synthesis and characterization of guanosine 3',5'-bis(diphosphate)." Anal Biochem 383(2): 337-339.