Algorithms in Bioinformatics

Welcome to the Algorithms in Bioinformatics lab.

The main focus of our lab is on developing new and advanced algorithms for bioinformatics. Here is a short list of our current main research interests:

Microbiome analysis and simulation
Long read analysis
Phylogenetic networks and trees
Models, algorithms, software and complexity

For more details, see the research section, our publications and our software.

Recent Publications

Anupam Gautam, Debaleena Bhowmik, Sayantani Basu, Wenhuan Zeng, Abhishake Lahiri, Daniel H Huson, Sandip Paul, Microbiome Metabolome Integration Platform (MMIP): a web-based platform for microbiome and metabolome data integration and feature identification, Briefings in Bioinformatics, Volume 24, Issue 6, November 2023

David Bryant, Daniel H. Huson, NeighborNet: improved algorithms and implementation, Front. Bioinform., 20 September 2023
Sec. Data Visualization Volume 3 - 2023

Wenhuan Zeng, Anupam Gautam, Daniel H. Huson, MuLan-Methyl—multiple transformer-based language models for accurate DNA methylation prediction, GigaScience, Volume 12, 2023, giad054, published 25 July 2023

Caner Bagci, Benjamin Albrecht, Daniel H. Huson, MAIRA: Protein-based Analysis of MinION Reads on a Laptop, Springer Link pp 223-234, June 2023