Cluster of Excellence – Controlling Microbes to Fight Infections

Publications

2020

Ewels PA, Peltzer A, Fillinger S, Patel H, Alneberg J, Wilm A, Garcia MU, Di Tommaso P, Nahnsen S. The nf-core framework for community-curated bioinformatics pipelines. Nat Biotechnol 38, 276–278 (2020). doi.org/10.1038/s41587-020-0439-x

Bafna JA, Sans-Serramitjana E, Acosta-Gutiérrez S, Bodrenko I, Hörömpöli D, Berscheid A, Brötz-Oesterhelt H, Winterhalter M, Ceccarelli M. Kanamycin Uptake into E. Coli Is Facilitated by OmpF and OmpC Porin Channels Located in the Outer Membrane. ChemRxiv. Preprint (2020) doi.org/10.26434/chemrxiv.11823552.v1

Bittner Z, Liu X, Shankar S, Tapia-Abellán A, Kalbacher H, Andreeva L, Mangan M, Düwell P, Lovotti M, Bosch K, Dickhöfer S, Marcu A, Stevanović S, Herster F, Löffler MW, Wolz OO, Schilling N, Kümmerle-Deschner J, Wagner S, Delor A, Grimbacher B, Wu H, Latz E, Weber ANR. BTK operates a phospho-tyrosine switch to regulate NLRP3 inflammasome activity. bioRxiv 864702 Preprint (2020) doi: doi.org/10.1101/864702

Xia PF, Casini I, Schulz S, Klask CM, Angenent LT, Molitor B. Reprogramming acetogenic bacteria with CRISPR-targeted base editing via deamination. bioRxiv Preprint (2020); doi: doi.org/10.1101/2020.04.20.047845

Malik IT, Pereira R, Vielberg MT, Mayer C, Straetener J, Thomy D, Famulla K, Castro H, Sass P, Groll M, Brötz‐Oesterhelt H. Functional Characterisation of ClpP Mutations Conferring Resistance to Acyldepsipeptide Antibiotics in Firmicutes. ChemBioChem 21 (2020); doi.org/10.1002/cbic.201900787

Renz A, Widerspick L, Dräger A. FBA reveals guanylate kinase as a potential target for antiviral therapies against SARS-CoV-2. Zenodo (2020). doi.org/10.5281/zenodo.3752641

2019

Klask CM, Kliem-Kuster N, Molitor B, Angenent LT. An open-source multiple-bioreactor system for replicable gas-fermentation experiments: Nitrate feed results in stochastic inhibition events, but improves ethanol production of Clostridium ljungdahlii with CO2 and H2. bioRxiv Preprint (2019); doi: https://doi.org/10.1101/2019.12.15.877050

Maier L. Komplexe Wechselwirkungen zwischen Arzneimitteln und dem Mikrobiom. Biospektrum 25, 707–710 (2019). https://doi.org/10.1007/s12268-019-1302-9

Schilling NA, Berscheid A, Schumacher J, Saur JS, Konnerth MC, Wirtz SN, Beltrán Beleña JM, Zipperer A, Krismer B, Peschel A, Kalbacher H, Brötz-Oesterhelt H, Steinem C, Grond SC. Synthetic lugdunin analogues reveal essential structural motifs for antimicrobial action and proton translocation capability. Angew Chem Int Ed Engl. (2019) May 6. doi: 10.1002/anie.201901589.