Quantitative Biology Center

Simon Heumos

Ph.D. Student

Contact:

+49-7071-29-70296

simon.heumosspam prevention@qbic.uni-tuebingen.de

www.qbic.uni-tuebingen.de

 

Biography:

  • 2016-2017: Master student at Computomics GmbH, Tübingen
  • 2015-2016: Bioinformatics developer at the Max Plank Institute for the Science of Human History, Jena
  • 2014-2017: M. Sc. in Bioinformatics. Thesis title: “Interactive Visualization of Genome Variation Graphs”
  • 2014-2015: System administrator and bioinformatics developer at Paleogenetics, Tübingen
  • 2013-2014: RNA-Seq data analyst at the Integrative Transcriptomics group, Tübingen
  • 2010-2014: B. Sc. in Bioinformatics. Thesis title: “TOPAS – TOolkit for Processing and Annotating Sequence data”

Scientific contributions:

  • Eizenga, J. M., Novak, A. M., Sibbesen, J. A., Heumos, S., Ghaffaari, A., Hickey, G., Chang, X., Seaman, J. D., Rounthwaite, R., Ebler, J., Rautiainen, M., Garg, S., Paten, B., Marschall, T., Sirén, J., & Garrison, E. (2020). Pangenome Graphs. Annual Review of Genomics and Human Genetics, 21(1), 139–162.
  • Eizenga, J. M., Novak, A. M., Kobayashi, E., Villani, F., Cisar, C., Heumos, S., Hickey, G., Colonna, V., Paten, B., & Garrison, E. (2020). Efficient dynamic variation graphs. Bioinformatics.
  • Herster, F., Bittner, Z., Codrea, M. C., Archer, N. K., Heister, M., Löffler, M. W., Heumos, S., … Weber, A. N. R. (2019). Platelets Aggregate With Neutrophils and Promote Skin Pathology in Psoriasis. Frontiers in Immunology, 10.
  • Richardson, J. R., Armbruster, N. S., Günter, M., Biljecki, M., Klenk, J., Heumos, S., & Autenrieth, S. E. (2019). PSM Peptides From Community-Associated Methicillin-Resistant Staphylococcus aureus Impair the Adaptive Immune Response via Modulation of Dendritic Cell Subsets in vivo. Frontiers in Immunology, 10
  • Fellows Yates J. A., Drucker D. G., Reiter E., Heumos S., Welker F., Münzel S. C., … Krause J. (2017). Central European Woolly Mammoth Population Dynamics: Insights from Late Pleistocene Mitochondrial Genomes. Scientific Reports, 7(1).

Honors and Awards: