Interfakultäres Institut für Mikrobiologie und Infektionsmedizin

Postdocs

Dr. Martina Adamek

Martina Adamek studied environmental sciences at Bielefeld University, where she decided to focus on the fields of Microbiology and Biotechnology. She finished her diploma thesis in the Proteome and Metabolome research group at Bielefeld University, where she worked on the biosynthesis of Xanthan gum in Xanthomonas camperstris pv. campestris. For her PhD she moved to the Karlsruhe Institute of Technology (KIT), Institute of Microbiology on Natural and Technical Interfaces (IFG) where she investigated the diversity within the opportunistic pathogenic bacterial species Stenotrophomonas maltophilia and was able to find novel candidate virulence genes of S. maltophilia using comparative genomics. After finishing her PhD she worked as a Postdoc at the University of Heidelberg, Institute of Immunology, developing diverse PCR applications for the use in clinical routine. Her interest in Microbiology brought her to Tuebingen, where her current research is directed at investigating the mechanisms and the evolutionary processes involved in creating the variety of bacterial natural products.

PhD Students

Daniel Männle

Daniel Männle completed his Bachelor’s degree in Geoecology at the University of Tuebingen with focus on Microbial Ecology and Geomicrobiology. During his time as BSc. student, he went to the University of Queensland, Australia for further studies on Microbial Diversity and Biotechnology. Driven by his interest, he completed his MSc. in Microbiology at the University of Tuebingen in the workgroup of Prof. Dr. Wohlleben on the topic “Localization of plasmid DNA in Streptomyces lividans by Fluorescence in situ Hybridization (FISH)”. Besides his studies, he worked at the biopharmaceutical company immatics biotechnologies GmbH, where he was involved in developing advanced immunotherapies against cancer. Since November 2015 he works as a PhD student in both the work group Synthetic Biology of Anti-infective Agents in the Pharmaceutical Biology (Pharmaceutical Institute) and the work group Applied Natural Products Genome Mining (Institute of Microbiology and Infection Medicine). He is interested in genome mining of bacterial secondary metabolite gene clusters by investigation of the vast potential of available microbial genomic data. With heterologous expression of candidate gene clusters in Streptomyces and downstream analytical analysis, he wants to discover new natural products and derivatives with potential antibacterial or antitumoral activity

Timo Negri

Timo Negri studied Biosciences at the Heidelberg University and finished his Bachelor thesis in the field of Glycolbiology at the Centre for Organismal Studies Heidelberg. During his Bachelor studies he became interested in the world of microorganisms and therefore decided to conduct his Master studies in Microbiology at the University of Tuebingen. He completed his Master’s degree in the research group of Applied Natural Products Genome Mining, where he investigated different soil types for their microbial natural product biosynthetic potential. Fascinated by the great diversity of natural products, he decided to continue his work as a PhD student. He is interested in investigating and accessing the true microbial biosynthetic capacity of promising soil types. Using culture independent metagenomic approaches he aims at identifying new secondary metabolites with potential therapeutic application from soil metagenomes.

Ahmed Desouky

Ahmed Desouky studied Pharmacy at MUST, Cairo. Obtained a M.Sc. in Microbiology from Friedrich-Schiller University, Jena. He carried out his thesis at Hans-Knoell Institute, Jena, at the group Secondary Metabolism of Predatory Bacteria. His research there was focused on isolation of natural products from the soil bacterium Cupriavidus basilensis, using genome-mining guided approaches, and NMR-spectroscopy. He moved to Tuebingen for his PhD, at the Ziemert group: Applied Natural Products Genome Mining (Institute of Microbiology and Infection Medicine). His interests includes, development of degenerate primers for screening of metagenomes for natural product clusters, and methods for detection and classification of biosynthetic gene clusters.

Mehmet Direnç Mungan

Mehmet Direnç Mungan studied Molecular Biology and Genetics at İstanbul University  focusing on the Bionformatic Applications on various DNA forms and their potential  link to certain diseases. His interest on the Bioinformatics field led him to work with Assoc. Prof. Jens Allmer in İzmir Institute of Technology on proteomics and  effective database handling when analyzing mass spectral data with database search  algorithms. He worked a year with Prof. Dr. Anne Frary on transcriptomic analysis of Pucinellia Distans when subjected to multiple chemicals and genome assembly for SSR detection of various plants. Since September 2018 he is working as a PhD candidate to improve genome mining tools for natural product discovery.

Shrikant Mantri

After completing his B.Pharmacy studies from University of Pune, Shrikant chose to pursue Master's in Bioinformatics at Indian Institute of Information Technology Allahabad, mainly to gain skills in computing and informatics to explore the biological big-data genomics questions and learn more about computer aided drug designing. Subsequently during his research stints at National Botanical Research Institute and National Agri-Food Biotechnology Institute, Shrikant has contributed in developing supercomputing enabled softwares and databases for accelerating plant genomics research and has collaborated with may groups interested in designing nutritionally improved crops. In ZiemertLab since October 2018, Shrikant is developing new software tools, pipelines and databases to facilitate the natural product discovery using metagenomics big-data. 

Master Students

Franziska Höhn

Franziska Höhn studied food sciences and biotechnology at the   University of Hohenheim. She finished her Bachelor´s degree on the   field of food microbiology and hygiene. Interested in microorganisms,   she started her Master´s degree in microbiology at the University of   Tübingen. Since October 2018 Franziska works as an intern in the   research group of Applied Natural Products Genome Mining.

Athina Gavriilidou

Athina Gavriilidou studied Biology at the Aristotle University of Thessaloniki, during which she became interested in the application of informatics tools that further biological goals. She chose to pursue a Masters Degree in Bioinformatics at the Karls Eberhard University of Tuebingen. Since June 2018 Athina is working as a student assistant in ZiemertLab.

Ziemertlab Alumni

  • Mohammad Alanjary, Ph.D Student
  • Helena Sales-Ortells, Postdoc
  • Michelle Schorn, UCSD visiting student
  • Maryam Elfeki, UIC visiting student
  • Kyra Geyer, Master student
  • Frauke Adam, Master Student
  • Katharina Steinke, Master Student
  • Anastasia Leonova, Master Student