Zentrum für Molekularbiologie der Pflanzen (ZMBP)

Research Group Liu
Plant chromatin structure and dynamics

Publications

(* correspondence; § equal contribution )

Nan Wang and Chang Liu*. (2019) Implications of liquid-liquid phase separation in plant chromatin organization and transcriptional control. Current Opinion in Genetics and Development 55:59-65.

Bo Hu§, Nan Wang§, Xiuli Bi§, Ezgi Süheyla Karaaslan, Anna-Lena Weber, Kenneth Wayne Berendzen and Chang Liu*. (2019) Plant Lamin-like Proteins Mediate Chromatin Tethering at the Nuclear Periphery. Genome Biology 20:87.

Long Wang§, Chuan-Miao Zhou§, Yan-Xia Mai, Ling-Zi Li, Jian Gao, Heng lian, Lin Han, Tian-Qi Zhang, Hong-Bo Tang, Hang Ren, Fu-Xiang Wang, Lian-Yu Wu, Xiao-Li Liu, Chang-Sheng Wang, Er-Wang Chen, Xue-Ning Zhang, Chang Liu and Jia-Wei Wang*. (2019) A Spatiotemporal Transcriptional Complex Underlies Heteroblastic Development of Leaf Hairs in Arabidopsis thaliana. The EMBO Journal e100063.

Corinna Speth, Emese Xochitl Szabo, Cláudia Martinho, Silvio Collani, Sven zur Oven-Krockhaus, Sandra Richter, Irina Droste-Borel, Boris Maček, York-Dieter Stierhof, Markus Schmid, Chang Liu and Sascha Laubinger*. (2018) Arabidopsis RNA processing factor SERRATE regulates the transcription of intronless genes. eLife 7:e37078.

Ezgi Süheyla Doğan and Chang Liu*. (2018) Chromatin packing and positioning of plant genomes in 3D. Nature Plants 4, 521-229.

Xiuli Bi and Chang Liu*. (2018) Genome-wide identification of chromatin domains anchored at the nuclear periphery in plants. Methods in Molecular Biology 1830, 381-393.

Olivier Raymond§, Jérôme Gouzy§, Jérémy Just§, Hélène Badouin§, Marion Verdenaud§, Arnaud Lemainque, Philippe Vergne, Sandrine Moja, Nathalie Choisne, Caroline Pont, Sébastien Carrère, Jean-Claude Caissard, Arnaud Couloux, Ludovic Cottret, Jean-Marc Aury, Judit Szecsi, David Latrasse, Mohammed-Amin Madoui, Léa François, Xiaopeng Fu, Shu-Hua Yang, Annick Dubois, Florence Piola, Antoine Larrieu, Magali Perez, Karine Labadie, Lauriane Perrier, Benjamin Govetto, Yoan Labrousse, Priscilla Villand, Claudia Bardoux, Véronique Boltz, Céline Lopez-Roques, Pascal Heitzler, Téva Vernoux, Michiel Vandenbussche, Hadi Quesneville, Adnane Boualem, Abdelhafid Bendahmane, Chang Liu, Manuel Lebris, Jérôme Salse, Sylvie Baudino, Moussa Benhamed, Patrick Wincker, Mohammed Bendahmane*. (2018) The Rosa genome provides new insights into the design of modern roses. Nature Genetics 50, 772-777.

Stefanie Dukowic-Schulze, Chang Liu and Changbin Chen* (2018) Not just gene expression: 3D implications of chromatin modifications during sexual plant reproduction. Plant Cell Reports 37, 11-16.

Wangsheng Zhu§, Bo Hu, Claude Becker, Ezgi Süheyla Doğan, Kenneth Wayne Berendzen, Detlef Weigel* and Chang Liu§*. (2017) Altered chromatin compaction and histone methylation drive non-additive gene expression in an interspecific Arabidopsis hybrid. Genome Biology 18:157.

Chang Liu*, Ying-Juan Cheng, Jia-Wei Wang, and Detlef Weigel*. (2017) Prominent topologically associated domains differentiate global chromatin packing in rice from Arabidopsis. Nature Plants 3, 742–748.

Chang Liu*. (2017) In situ Hi-C library preparation for plants to study their three-dimensional chromatin interactions on a genome-wide scale. Methods in Molecular Biology 1629, 155-166.

Xiuli Bi§, Ying-Juan Cheng§, Bo Hu, Xiaoli Ma, Rui Wu, Jia-Wei Wang and Chang Liu*. (2017) Non-random domain organization of the Arabidopsis genome at the nuclear periphery. Genome Research 27, 1162-1173.

Dominik G. Grimm*, Damian Roqueiro, Patrice A. Salomé, Stefan Kleeberger, Bastian Greshake, Wangsheng Zhu, Chang Liu, Christoph Lippert, Oliver Stegle, Bernhard Schölkopf, Detlef Weigel and Karsten M. Borgwardt*. (2017) easyGWAS: A cloud-based platform for comparing the results of genome-wide association studies. The Plant Cell 29, 20-38.

Chang Liu*, Congmao Wang, George Wang, Claude Becker, Maricris Zaidem and Detlef Weigel*. (2016) Genome-wide analysis of chromatin packing in Arabidopsis thaliana at single-gene resolution. Genome Research 26,1057-1068.

Chang Liu* and Detlef Weigel*. (2015) Chromatin in 3D: Progress and Prospects for Plants. Genome Biology 16:170.

Congmao Wang§, Chang Liu§*, Damian Roqueiro, Dominik Grimm, Rebecca Schwab, Claude Becker, Christa Lanz, and Detlef Weigel*. (2015) Genome-wide analysis of local chromatin packing in Arabidopsis thaliana. Genome Research 25, 246-256.

Xingliang Hou, Jiannan Zhou, Chang Liu, Lu Liu, Lisha Shen and Hao Yu*. (2014) Nuclear Factor Y-mediated H3K27me3 demethylation of the SOC1 locus orchestrates flowering responses of Arabidopsis. Nature Communications 5, 4601.

Chang Liu, Zhi Wei Norman Teo, Yang Bi, Shiyong Song, Wanyan Xi, Xiaobei Yang , Zhongchao Yin and Hao Yu*. (2013) A conserved genetic pathway determines inflorescence architecture in Arabdidopsis and rice. Developmental Cell 24, 612-622.

Zhen Tao, Lisha Shen, Chang Liu, Lu Liu, Yuanyuan Yan and Hao Yu*. (2012) Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis. The Plant Journal 70, 549-561.

Lu Liu§, Chang Liu§, Xingliang Hou, Wanyan Xi, Lisha Shen, Zhen Tao, Yue Wang, Hao Yu*. (2012) FTIP1 is an essential regulator required for florigen transport. PLoS Biology 10(4): e1001313.

Wanyan Xi§, Chang Liu§, Xingliang Hou and Hao Yu*. (2010) Mother of FT and TFL1 regulates seed germination through constituting a negative feedback loop of ABA signaling. The Plant Cell 22, 1733-1748.

Yu Wang, Chang Liu, Daiwen Yang, Hao Yu* and Yih-Cherng Liou*. (2010) Pin1At encoding a peptidyl-prolyl cis/trans isomerase regulates flowering time in Arabidopsis. Molecular Cell 37, 112-122.

Chang Liu, Zhonghui Thong and Hao Yu*. (2009) Coming into bloom: the specification of floral meristems. Development 136, 3379-3391.

Chang Liu, Wanyan Xi, Lisha Shen, Caiping Tan and Hao Yu*. (2009) Regulation of floral patterning by flowering time genes. Developmental Cell 16, 711-722.

Dan Li§, Chang Liu§, Lisha Shen§, Yang Wu, Hongyan Chen, Chris A. Helliwell, Toshiro Ito, Elliot M. Meyerowitz and Hao Yu*. (2008) A repressor complex governs the integration of flowering signals in Arabidopsis. Developmental Cell 15, 110-120.

Chang Liu, Hongyan Chen, Hong Ling Er, Hui Meng Soo, Prakash P. Kumar, Jin-Hua Han, Yih-Cherng Liou, and Hao Yu*. (2008) Direct interaction of AGL24 and SOC1 integrates flowering signals in Arabidopsis. Development 135, 1481-1491.

Chang Liu§, Jing Zhou§, Keren Bracha-Drori, Shaul Yalovsky, Toshiro Ito and Hao Yu*. (2007) Specification of Arabidopsis floral meristem identity by repressing flowering time genes. Development 134, 1901-1910.

Yinbo Gan, Chang Liu, Hao Yu and Pierre Broun*. (2007) Integration of cytokinin and gibberellin signaling by Arabidopsis transcription factors GIS, GIS2 and GIS3 in the regulation of epidermal cell fate. Development 134, 2073-2081.

Yinbo Gan, Rod Kuminoto, Chang Liu, Oliver Ratcliffe, Hao Yu and Pierre Broun*. (2006) GLABROUS INFLORESCENCE STEMS modulates gibberellin signaling in the regulation of epidermal differentiation and shoot maturation in Arabidopsis. The Plant Cell 18, 1383-1395.