Uni-Tübingen

Publications

2022

  • Chavez Rodriguez L, González-Nicolás A, Ingalls B, Nowak W, Xiao S, Pagel H.(2022): Optimal design of experiments to improve the characterization of atrazine degradation pathways in soil. European Journal of Soil Science. 2022;73(1):e13211.
  • Gerke, H. H., - Vogel, H.-J., Weber, T. K. D., van der Meij, W. M., & Scholten, T. (2022). 3–4D soil model as challenge for future soil research: Quantitative soil modeling based on the solid phase. Journal of Plant Nutrition and Soil Science, 00, 1– 25. doi.org/10.1002/jpln.202200239.
  • González-Nicolás A, Bilgic D, Kröker I, Mayar A, Trevisan L, Steeb H, ... Nowak, W. (2022): Optimal exposure time in Gamma-Ray Attenuation experiments for monitoring time-dependent densities. Transport in Porous Media. 2022.
  • Hsueh H, Guthke A, Wöhling T, Nowak W. (2022): Diagnosis of model-structural errors with a sliding time-window Bayesian analysis. Water Resources Research. 2022;58:e2021WR030590.
  • Huang, Y.M., Jakus, N., Straub, D., Konstantinidis, K.T., Blackwell, N., Kappler, A., Kleindienst, S. (2022). ‘Candidatus Ferrigenium straubiae’ sp. nov., ‘Candidatus Ferrigenium bremense’ sp. nov., ‘Candidatus Ferrigenium altingense’ sp. nov., are autotrophic Fe(II)-oxidizing bacteria of the family Gallionellaceae. Syst Appl Microbiol, 45(3): 126306
  • Jimenez-Fernandez, O., Schwientek, M., Osenbrück, K., Glaser, C., Schmidt, C., Fleckenstein, J.H. (2022): Groundwater-surface water exchange as key control for instream and groundwater nitrate concentrations along a first-order agricultural stream. Hydrological Processes, 02 February 2022; doi.org/10.1002/hyp.14507.
  • Liu, B., Finkel, M., Grathwohl, P. (2022): First order approximation for coupled film and intraparticle pore diffusion to model sorption/desorption batch experiments.  Journal of Hazardous Materials 429 (2022) 128314.
  • Meierdierks, J., Zarfl, C., Beckingham, B., and Grathwohl, P. (2022): Comprehensive Multi-compartment Sampling for Quantification of Long-Term Accumulation of PAHs in Soils. ACS Environmental AU. https://doi.org/10.1021/acsenvironau.2c00015
  • Mellage, A., M. Dorrich, and S.B. Haderlein(2022): Capturing In Situ Glyphosate (De)sorption Kinetics in Floodplain Aquifer Sediment Columns: Geophysical Measurements and Reactive Transport Modeling. Environmental Science & Technology, 2022.
  • Osenbrück, K., Blendinger, E., Leven, C., Rügner, H., Finkel, M., Schulz, H., Grathwohl, P. (2022) Nitrate reduction potential of a fractured Middle Triassic carbonate aquifer, Southwest Germany. Hydrogeol. J., https://doi.org/10.1007/s10040-021-02418-9.
  • Petrova, E., Kortunov, E., Mayer, K.U., Grathwohl, P., Finkel, M., (2022): Travel time-based modelling of nitrate reduction in a fractured limestone aquifer by pyrite and iron carbonates under pore size limitation. Journal of Contaminant Hydrology, 248, 103983, https://doi.org/10.1016/j.jconhyd.2022.103983
  • Schäfer Rodrigues Silva A, Weber TK, Gayler S, Guthke A, Höge M, Streck T, …, and W Nowak (2022): Diagnosing Similarities in Probabilistic Multi-Model Ensembles - an Application to Soil-Plant-Growth-Modeling, Modeling Earth Systems and Environment, doi: 10.1007/s40808-022-01427-1.
  • Sponagel C; Bendel, D; Angenendt, E; Weber, TKD; Gayler, S; Streck, T; and E Bahrs (2022) Integrated assessment of regional approaches for biodiversity offsetting in urban-rural areas - a future based case study from Germany using arable land as an example, Land Use Policy, LUP-D-21-01351.
  • Störiko, A., Pagel, H., Mellage, A., van Cappellen, P, Cirpka, O.A. (2022): Denitrification-driven transcrip-tion and enzyme production at the river-groundwater interface: Insights from reactive-transport modeling. Water Resour. Res. 58(8): e2021WR031584, doi: 10.1029/2021WR031584.
  • Schloegl, J., Wimmer, B., Cramaro, L., Wirsching, J., Poll, C., Pagel, H., Kandeler, E., Huhn, C., Griebler, C., Haderlein, S. B. (2022): Heavy rainfall following a summer drought stimulates soil redox dynamics and facilitates rapid and deep translocation of glyphosate in floodplain soils. Environmental Science: Processes & Impacts 24(5), 825-838. DOI: 10.1039/d1em00527h.
  • Wang, Z., Jimenez-Fernandez, O., Osenbrück, K., Schwientek, M., Schloter, M., Fleckenstein, J.H., Lueders, T. (2022): Streambed microbial communities in the transition zone between groundwater and a first-order stream as impacted by bidirectional water exchange. Water Research, Volume 217, 15 June 2022, 118334.
  • Wimmer, B., et al., Phosphate addition enhances alkaline extraction of glyphosate from highly sorptive soils and aquatic sediments. Pest Management Science, 2022. 78(6): p. 2550-2559.
  • Wirsching, J., Wimmer, B., Ditterich, F., Schlögl, J., Martin-Laurent, F., Huhn, C., Haderlein, S., Kandeler, E., Poll, C. (2022): 13C assimilation as well as functional gene abundance and expression elucidate the biodegradation of glyphosate in a field experiment. Environmental Pollution 306, 119382.
  • Wei, R., Escher, B.I., Glaser, C., König, M., Schlichting, R., Schmitt, M., Störiko, A., Viswanathan, M., Zarfl, C. (2022): Modeling the Dynamics of Mixture Toxicity and Effects of Organic Micropollutants in a Small River under Unsteady Flow Conditions. doi.org/10.1021/acs.est.2c02824
  • Viswanathan, M., Weber, T. K.D., Gayler, S., Mai, J., Streck, T. (2022). A bayesian sequential updating approach to predict phenology of silage maize. Biogeosciences, 19(8):2187– 2209.
  • Viswanathan, M., Scheidegger, A.,  Streck, T.,  Gayler, S., Weber, T. K. D.(2022). Bayesian multi-level calibration of a process-based maize phenology model. Ecological Modelling, in print.
  • Weber, TKD; Ingwersen, J; Poyda, A; … and Streck, T. (2022): Multi-site, multi-crop measurements in the soil–vegetation–atmosphere continuum: a comprehensive dataset from two climatically contrasting regions in southwestern Germany for the period 2009–2018, Earth Syst. Sci. Data, 14, 1153–1181, 2022, doi: 10.5194/essd-14-1153-2022.
  • Wirsching, J., Chavez Rodriguez, L., Ditterich, F., Pagel, H., He, R., Uksa, M., Zwiener, C., Kandeler, E., Poll, C. (2022): Temperature and soil moisture change microbial allocation of pesticide-derived carbon. Ecotoxicology and Environmental Safety.
  • Zare, H; Weber, TKD; Ingwersen, J; Gayler, S; Nowak, W; and Streck, T (2022): Combining remote sensing and modelling approach for a real-time prediction of crop yield in uncertain conditions, Remote Sens. 2022, 14, 1360., doi: 10.3390/rs14061360.

Related papers:

  • Dueri, S; …; Weber, TKD; … (2022): Simulation of wheat response to variable sowing dates and densities in a high-yielding environment, JEXBOT/2021/306458.
  • Groh, J; Weber, TKD; … and H Gerke (2022): Same soil - different climate: crop model inter-comparison on translocated lysimeters, Vadose Zone Journal, 2021-11-0082-ORA.R1.
  • Li, S., Kappler, A., Haderlein, S. B., & Zhu, Y. G., Powering biological nitrogen removal from the environment by geobatteries. Trends in Biotechnology, 2022. 40(4): p. 377-380
  • Martin, M; Weber, TKD; Fiedler, J; Fuß, R; Glatzel, S; Huth, V; Jordan, S; Jurasinski, G; Kutzbach, L; Schäfer, K; Weymann, D; Hagemann, U (2022): Introduction of a guideline for measurements of greenhouse gas fluxes from soils using non-steady state chambers, J. Plant Nutr. Soil Sci. 2022;1–15, doi: 10.1002/jpln.202200199
  • Mequanint, F; Gayler, S; Weber, TKD; Tesfaye, K; and Streck, T. (2022): Climate change impact on crop growth in Ethiopia: A multi-model uncertainty analysis, PLoS ONE 17(1), e0262951, doi: 10.1371/journal.pone.0262951.
  • Nasrabadi, T., Rügner, H., Schwientek, M., Ghadiri, A., Hossein Hashemi, S., Grathwohl, P. (2022): Dilution of PAHs loadings of particulate matter in air, dust and rivers in urban areas: A comparative study (Tehran megacity, Iran and city of Tübingen, SW-Germany). STOTEN https://doi.org/10.1016/j.scitotenv.2021.151268

2021

  • Banerjee, I., Guthke, A., Van De Ven, C.J.C., Mumford, K.G., Nowak, W. (2021): Overcoming the model-data-fit problem in porous media: A quantitative method to compare invasion-percolation models to high-resolution data. Water Resources Research. https://doi.org/10.1029/2021WR029986.
  • Chavez Rodriguez, L., Ingalls, B., Meierdierks, J., Kundu, K., Streck, T., and Pagel, H. (2021). Modeling Bioavailability Limitations of Atrazine Degradation in Soils. Frontiers in Environmental Science 9, 361. doi:10.3389/fenvs.2021.706457.
  • Chavez Rodriguez, L., Ingalls, B., Schwarz, E., Streck, T., Uksa, M., and Pagel, H. (2021). Correction to “Gene-Centric Model Approaches for Accurate Prediction of Pesticide Biodegradation in Soils.” Environ. Sci. Technol. 55, 6524–6524.
  • Gonzalez-Nicolas, A., Schwientek, M., Sinsbeck, M., Nowak, W. (2021): Characterization of export regime in discharge-concentration plots via an advanced time-series model and event-based sampling strategies. Water 2021, 13, 1723. https://doi.org/10.3390/w13131723.
  • Huang, Y.M., Straub, D., Kappler, A., Smith, N., Blackwell, N., Kleindienst, S. (2021): A novel enrichment culture highlights core features of microbial networks contributing to autotrophic nitrate reduction coupled to Fe(II) oxidation. Microb Physiol 2021;31:280–295. https://doi.org/10.1159/000517083.
  • Huang, Y.M., Straub, D., Blackwell, N., Kappler, A., Kleindienst, S. (2021): Meta-omics reveal Gallionellaceae and Rhodanobacter as interdependent key players for Fe(II) oxidation and nitrate reduction in the autotrophic enrichment culture KS. Appl Environ Microbiol. 2021 Aug; 87(15): e00496-21. doi:10.1128/AEM.00496-21.
  • Jakus, N., Blackwell, N., Osenbrueck, K., Straub, D., Byrne, J.M., Wang, Z., Gloeckler, D., Elsner, M., Lueders, T., Grathwohl, P., Kleindienst, S., Kappler, A. (2021): Nitrate removal by a novel autotrophic nitrate-reducing iron(II)-oxidizing culture enriched from a pyrite-rich limestone aquifer. Appl Environ Microbiol 2021, 27;87(16):e0046021. doi: 10.1128/AEM.00460-21. Epub 2021 Jul 27.
  • Jakus, N., Mellage, A., Höschen, C., Maisch, M., Byrne, J.M., Mueller, C.W., Grathwohl, P., Kappler, A. (2021): Anaerobic Neutrophilic Pyrite Oxidation by a Chemolithoautotrophic Nitrate-Reducing Iron(II)-Oxidizing Culture Enriched from a Fractured Aquifer, Environmental Science and Technology, https://doi.org/10.1021/acs.est.1c02049.
  • Klingler, S., Martin, S., Cirpka, O.A., Dietrich, P., Leven, C. (2021): Kombination geophysikalischer und hydrogeologischer Methoden zur gezielten Erkundung feinkörniger Talfüllungen. Grundwasser volume 26, pages 379–394 (2021).
  • Muller, M.E., Zwiener, C., Escher, B.I. (2021): Storm Event-Driven Occurrence and Transport of Dissolved and Sorbed Organic Micropollutants and associated effects in the Ammer River, Southwestern Germany. Environ Toxicol Chem 40:88-99. DOI: 10.1002/etc.4910.
  • Niu, L.L., Ahlheim, J., Glaser, C., Gunold, R., Henneberger, L., Konig, M., Krauss, M., Schwientek, M., Zarfl, C., Escher, B.I. (2021): Suspended particulate matter – source or sink for chemical mixtures of organic micropollutants in a small river under baseflow conditions? Environ Sci Technol 55:5106-5116.
  • Schmitt, M., Wack, K., Glaser, C., Wei, R., Zwiener C. (2021): Separation of photochemical from non-photochemical diurnal in-stream attenuation of micropollutants. Environ Sci Technol; DOI: 10.1021/acs.est.1c02116.
  • Selzer, P., Allgeier, J., Terrien, R., Cirpka, O.A. (2021): Finite-Volume flux reconstruction and semi-analytical particle tracking on triangular prisms for Finite-Element-type models of variably-saturated flow. Advances Water Resour., doi: 10.1016/j.advwatres.2021.103944.
  • Spona-Friedl, M., Braun, A., Huber, C., Eisenreich, W., Griebler, C., Kappler, A., Elsner, M. (2020): Substrate-dependent CO2-fixation in heterotrophic bacteria revealed by stable isotope labelling. FEMS Microbiology Ecology 96, fiaa080.
  • Störiko, A., Pagel, H., Mellage, A., Cirpka, O.A. (2021): Does it pay off to explicitly link functional gene ex-pression to denitrification rates in reaction models? Frontiers Microbiol. (in press), doi: 10.3389/fmicb.2021.684146.
  • Visser, A.N., Lehmann, M.F., Ruegner, H., D'Affonseca, F.M., Grathwohl, P., Blackwell, N., Kappler, A., Osenbrueck, K. (2021): Fate of nitrate during groundwater recharge in a fractured karst aquifer. Hydrogeology Journal 29, 1153-1171.https://doi.org/10.1007/s10040-021-02314-2.
  • Wallach, D; et al.; …; Streck, T., ...,  Weber, TKD; … (2021): How well do crop modeling groups predict wheat phenology, given calibration data from the target population, European Journal of Agronomy, 124, 126195.
  • Weber, TKD, Ingwersen, J, Poyda, A, …, Streck, T (2021): 9 years of comprehensive multi-site, multi-climatic region, multi-crop in the soil-vegetation-atmosphere continuum in agroecosystems of South-Western Germany, Earth System Science Data, doi: 10.5194/essd-2020-396
  • Yang, J., Heidbüchel, I., Musolff, A., Xie, Y., Lu, C., Fleckenstein, J.H. (2021): Using nitrate as a tracer to constrain age selection preferences in catchments with strong seasonality. Journal of Hydrology, 603A, December 2021, 126889.

Related papers:

  • Glodowska, M., Schneider, M., Eiche, E., Kontny, A., Neumann, T., Straub, D., Berg, M., Bostick, B.C., Nghiem, A.A., Kleindienst, S., Kappler, A. (2021): Fermentation, methanotrophy and methanogenesis influence sedimentary Fe and As dynamics in As-affected aquifers in Vietnam. Science of the Total Environment 779, 146501.
  • Glodowska, M., Schneider, M., Eiche, E., Kontny, A., Neumann, T., Straub, D., Kleindienst, S., Kappler, A. (2021): Microbial transformation of biogenic and abiogenic Fe minerals followed by in-situ incubations in an As-contaminated vs. non-contaminated aquifer. Environmental Pollution 281, 117012.
  • Huang, J., Jones, A.T., Waite, D., Chen, Y., Huang, X., Rosso, K.M., Kappler, A., Mansor, M., Tratnyek, P.G., Zhang, H. (2021): Fe(II) Redox Chemistry in the Environment. Chem. Rev. 2021, 121, 13, 8161–8233. https://doi.org/10.1021/acs.chemrev.0c01286.
  • Mansor, M., Drabesch, S., Bayer, T., van Le, A., Chauhan, A., Schmidtmann, J., Peiffer, S., Kappler, A. (2021): Application of single particle ICP-MS to determine mass distribution and number concentrations of environmental nanoparticles and colloids. Environ. Sci. Technol. Lett. 2021, 8, 7, 589–595. https://doi.org/10.1021/acs.estlett.1c00314.
  • Yan, R., Kappler, A., Horn, M.A., Peiffer, S. (2021): Towards a standardized protocol for studying chemolithoautotrophic denitrification with pyrite at circumneutral pH. Applied Geochemistry 130, 104995.
  • Kappler, A., Bryce, C., Mansor, M., Lueder, U., Byrne, J.M., Swanner, E. (2021): An evolving view on biogeochemical cycling of iron. Nature Reviews Microbiology. https://doi.org/10.1038/s41579-020-00502-7.
  • Peiffer S., Kappler A., Haderlein S.B., Schmidt C., Byrne J.M., Kleindienst S., Vogt C., Richnow H.H., Obst M., Angenent L., Bryce C., McCammon C., Planer-Friedrich B. (2021) A biogeochemical-hydrological framework for the role of redox active compounds in aquatic systems. Nature Geoscience. doi: 10.1038/s41561-021-00742-z.
  • Scheurer S., Schäfer Rodrigues Silva A., Mohammadi F., Hommel J., Oladyshkin S., Flemisch B., Nowak W. (2021, accepted): Surrogate-based Bayesian Comparison of Computationally Expensive Models: Application to Microbially Induced Calcite Precipitation. Computational Geosciences volume 25, pages 1899–1917 (2021).
  • Wallach, D; et al.; …; Weber, TKD; …, Streck, T, ...; SJ Seidel (2021) The chaos in calibrating crop models, Environmental Modelling and Software, 145 (2021), doi: 10.1016/j.envsoft.2021.105206.
  • Wallach, D; et al.; …; Weber, TKD; …, Streck, T, ...,  SJ Seidel (2021) Multi-model evaluation of phenology prediction for wheat in Australia, Agricultural and Forest Meteorology, 2021, 298-299, 108289.
  • Szabo, B; Weynants, M; and Weber TKD (2021) Updated European Hydraulic Pedotransfer Functions with Communicated Uncertainties in the Predicted Variables (euptfv2), Geoscientific Model Development, doi: 10.5194/gmd-2020-36.

2020

  • Allgeier, J., González-Nicolás, A., Nowak, W., Cirpka, O.A. (2020): A stochastic framework to optimize monitoring strategies for delineating groundwater divides. Frontiers Earth Sci. 8: 554845: doi: : 10.3389/feart.2020.554845.
  • Abramov, S., Tejada, J., Grimm, L., Schaedler, F., Bulaev, A.G., Tomaszewski, E., Byrne, J., Straub, D., Thorwarth, H., Amils, R., Kleindienst, S., Kappler, A. (2020): Role of biogenic Fe(III) minerals as a sink and carrier of heavy metals in the Rio Tinto river, Spain. Sci Total Environ 718: 137294, doi: 10.1016/j.scitotenv.2020.137294.
  • Blackwell, N., Bryce, C., Straub, D., Kappler, A., Kleindienst, S. (2020): Genomics insights into two novel Zetaproteobacteria Fe(II)-oxidizing isolates reveal lifestyle adaption to coastal marine sediments. Appl. Environ Microbio., doi: 10.1128/AEM.01160-20.
  • Bugsel, B., Zwiener, C. (2020): LC-MS screeining of poly- and perfluoroalkyl substances in contaminated soil by Kendrick mass analysis. Anal. Bioanal. Chem. 412: 4797-4805, doi: 10.1007/s00216-019-02358-0.
  • Chavez Rodriguez, L., Ingalls, B., Schwarz, E., Streck, T., Uksa, M., and Pagel, H. (2020).Gene-Centric Model Approaches for Accurate Prediction of Pesticide Biodegradation in Soils. Environ. Sci. Technol. 54, 13638–13650. doi:10.1021/acs.est.0c03315.
  • D'Affonseca, F.M., Finkel, M., Cirpka, O.A. (2020): Combining implicit geological modeling, field surveys, and hyfrogeological modeling to describe groundwater flow in a karst aquifer. Hydrogeology Journal 28: 27792802, doi: 10.1007/s10040-020-02220-z.
  • D. Erdal, O.A. Cirpka (2020): Technical Note: Improved sampling of behavioral subsurface flow model parameters using active subspaces. Hydrol. Earth Sys. Sci., 24: 4567-4574, doi: 10.5194/hess-24-4567-2020.
  • Erdal, D., Xiao, S., Nowak, W., Cirpka, O.A. (2020): Sampling behavioral model parameters for ensemble-based sensitivity analysis using Gaussian Process Emulation and Active Subspaces. Stoch. Environ. Res. Risk Ass., 34:1813-1830, doi: 10.1007/s00477-020-01867-0.
  • Finkel, M., Baur, A., Weber, T.K.D., Osenbrück, K., Rügner, H., Leven, C., Schwientek, M., Schlögl, J., Hahn, U., Streck, T., Cirpka, O.A., Walter, T., Grathwohl, P. (2020): Managing collaborative research data for integrated, interdisciplinary environmental research. Earth Sci Inform: 1-14, doi: 10.1007/s12145-020-00441-0.
  • Glaser, C., Zarfl. C., Werneburg, M., Böckmann, M., Zwiener, C., Schwientek, M. (2020): Temporal and spatial variable in-stream attenuation of selected pharmaceuticals. Sci. Total Environ. 741: 139514, doi: 10.1016/j.scitotenv.2020.139514.
  • Glaser, C., Zarfl, C., Rügner, H., Lewis, A., Schwientek, M. (2020): Analysing particle-associated pollutant transport to identify in-stream sediment processes during a high flow event. Water 12(6): 1794, doi: 10.3390/w12061794.
  • Glaser, C., Schwientek, M., Junginger, T., Gilfedder, B.S., Frei, S., Werneburg, M., Zwiener, C., Zarfl, C. (2020): Comparison of environmental tracers including organic micropollutants as groundwater exfiltration indicators into a small river of a karstic catchment. Hydrological Processes 34(24), 4712-4726. doi.org/10.1002/hyp.13909.
  • Glodowska, M., Stopelli, E., Schneider, M., Lightfoot, A., Rathi, B., Straub, D., Patzner, M., Berg, M., Vu, D., Kleindienst, S., Kappler, A. (2020): Role of in-situ natural organic matter in mobilizing As during microbial reduction of Fe(III)-mineral-bearing aquifer sediments from Hanoi (Vietman) Environ Sci Technol. 54,7: 4149-4159, doi: 10.1021/acs.est.9b07183.
  • Groh, J, Diamantopoulos, E., Duan, X, … Weber, TKD, …, and HH Gerke (2020) Crop growth and soil water fluxes at erosion-affected arable sites: Using weighing lysimeter data for model inter-comparison, Vadose Zone J. 19:e20058, doi: 10.1002/vzj2.20058.
  • Heidgen, S., Marinova, E., Krauß, R., Nelle, O., Ebner, M., Märkle, T., Miranda, T., Bofinger, J., Klingler, S., Junginger, A. (2020): Palaeoenvironment and potential resources for early Holocene subsistence in the Ammer River Valley (Germany) based on palaeoecological and bioarchaeological evidence. Quaternary International, in press, doi: 10.1016/j.quaint.2020.05.038.
  • Höge, M., Guthke, A. Nowak, W. (2020): Bayesian model weighting: The many faces of model averaging. Water 12(2): 309, doi: 10.3390/w12020309.
  • Klingler, S., Leven, C., Cirpka, O.A., Dietrich, P. (2020): Anomaly effect-driven optimization of direct-current geoelectric mapping surveys in large areas. Journal of Applied Geophysics 176, doi: 10.1016/j.jappgeo.2020.104002.
  • Klingler, S., Cirpka, O.A., Werban, U., Leven, C., Dietrich, P. (2020): Direct-push color logging images spatial heterogeneity of organic carbon in floodplain sediments. J. Geophys. Res. Biogeosci. 125(12): e2020JG005887, doi: 10.1029/2020JG005887.
  • Li,S., Braun, J.C., Buchner, D., Haderlein, S.B. (2020): Denitrifier method for nitrite removal in electrochemical analysis of the electron accepting capacity of humic sustances. Anal. Chem. 92(1): 616-621, doi: 10.1021/acs.analchem.9b03683.
  • Li, S., Kappler, A., Zhu, Y., Haderlein, S.B. (2020): Mediated electrochemical analysis as emerging tool to unravel links between microbial redox cycling of natural organic matter and anoxic nitrogen cycling. Earch Sc. Rev. (208), doi: 10.1016/j.earscirev.2020.103281.
  • Lihl, C., Heckel, B., Grzybkowska, A., Dybala-Defratyka, A., Ponsin, V., Torrentó, C., Hunkeler, D., Elsner, M. (2020): Compound-specific chlorine isotope fractionation in biodegradation of atrazine. Environ. Sci. Processes Impacts 22: 792-801, doi: doi: 10.1039/c9em00503j.
  • Liu, Y., Zarfl, C., Basu, N., Cirpka, O.A. (2020): Modeling the fate of pharmaceuticals in a fourth-order river under competing assumptions of transient storage. Water Resour. Res. 56(3): e2019WR026100, doi: 10.1029/2019WR026100.
  • Lutz, S.R., Trauth, N., Musolff, A., Van Breukelen, B.M., Knöller, K., Fleckenstein, J.H. (2020): How important is denitrification in riparian zones? Combining end-member mixing and isotope modeling to quantify nitrate removal from riparian groundwater. Water Resources Research 56: e2019WR025528, doi: 10.1029/2019WR025528.
  • Maier, R., Gonzalez-Nicolas, A., Leven, C., Nowak, W., Cirpka, O.A. (2020): Joint optimization of measurement and modeling strategies with application to radial flow in statified aquifers. Water Resour. Res. 56(7): e2019WR026872, doi: 10.1029/2019WR026872.
  • Martin, P. R.; Buchner, D.; Jochmann, M. A.; Haderlein, S. B. (2020): Stable carbon isotope analysis of polyphosphonate complexing agents by anion chromatography coupled to isotope ratio mass spectrometry: method development and application. Anal. Bioanal. Chem. 412: 4827-4835, doi: 10.1007/s00216-019-02251-w.
  • Martin, S., Klingler, S., Dietrich, P., Leven, C., Cirpka, O.A. (2020): Structural controls on the hydrogeological functioning of a floodplain. Hydrogeology Journal 28: 2675–2696, doi: 10.1007/s10040-020-02225-8.
  • Melsbach, A., Torrentó, C., Ponsin, V., Bolotin, J., Lachat, L., Prasuhn, V., Hofstetter, T.B., Hunkeler, D., Elsner, M. (2020): Dual-Element Isotope Analysis of deshenylchloridazon to investigate its environmental fate in a systematic field study: A long-term lysimeter experiment. Environ. Sci. Technol., doi: 10.1021/acs.est.9b04606.
  • Müller, M.E., Werneburg, M., Glaser, C., Schwientek, M., Zarfl, C., Escher, B.I., Zwiener, C. (2020): Influence of emission sources and tributaries on the spatial and temporal patterns of micropollutant mixtures and associated effects in a small river. Environ. Toxicol. Chem. 39(7): 1382-1391, doi: 10.002/etc.4726.
  • Nowak, K.M., Miltner, A., Poll, C., Kandeler, E., Streck, T., Pagel, H. (2020): Plant litter enhances degradation of the herbicide MCPA and increases formation of biogenic non-extractable residues in soil. Environ Int 142105867, doi: 10.1016/j.envint.2020.105867.     
  • Pagel, H., Kriesche, B., Uksa, M., Poll, C., Kandeler, E., Schmidt, V., Streck, T. (2020): Spatial control of carbon dynamics in soil by microbial decomposer communities. Front. Environ. Sci. 8, doi: 10.3389/fenvs.2020.00002.
  • Riedel, T., Weber, T.K.D. (2020): Review: The influence of global change on Europe's water cycle and groundwater recharge. Hydrogeology Journal, doi: 10.1007/s10040-020-02165-3
  • Sanchez-León, E., Leven, C., Erdal, D., Cirpka, O.A. (2020): Comparison of two Ensemble-Kalman based methods for estimating aquifer parameters from real 3-D hydraulic and tracer tomographic tests. Geosci. 10: 462, doi: 10.3390/geosciences10110462.
  • Sanchez-León, E., Erdal, D., Leven, C., Cirpka, O.A. (2020): Comparison of two Ensemble-Kalman based methods for estimationg aquifer parameters from virtual 2-D hydraulic and tracer tomographic test. Gesosci. 10(7): 276, doi: 10.3390/geosciences10070276.
  • Schäfer Rodrigues Silva, A., Guthke, A., Höge, M., Cirpka, O.A., Nowak,W. (2020): Strategies for simplifying reactive transport models - a Bayesian model comparison. Water Resour. Res., 56(11): e2020WR028100, doi: 10.1029/2020WR028100.
  • Selzer, P., Cirpka, O.A. (2020): Postprocessing of standard Finite-Element velocity fields for accurate particle tracking applied to groundwater flow. Computational Geosciences, 24(4), 1605-1624in press, doi: 10.1007/s10596-020-09969-y.
  • Streck, T., Weber, T.K.D. (2020): Analytical expressions for noncapillary soil water retention based on popular capillary retention models. Vadose Zone j:, 19: e20042, doi: 10.1002/vzj2.20042.
  • Subdiaga, E., Harir, M., Orsetti, S., Hertkorn, N., Schmitt-Kopplin, P., Haderlein S.B. (2020): Preferential sorption of tannins at aluminum oxide affects the electron exchange capacities of dissolved and sorbed humic acid fractions. Environ Sci Technol 54(3): 1837-1847, doi: 10.1021/acs.est.9b04733.
  • Szabó, B, Gyurkó, D, Weynants, M, Weber, TKD (2020). Web interface for European hydraulic pedotransfer functions (euptfv2) DOI: doi.org/10.34977/euptfv2.01, Institute for Soil Sciences and Agricultural Chemistry, Centre for Agricultural Research.
  • Utom, A.U., Werban, U., Leven, C., Müller, C., Knöller, K., Vogt, C., Dietrich, P. (2020): Groundwater nitrification and denitrification are not always strictly aerobic and anaerobic processes, respectively: an assessment of dual-nitrate isotopic and chemical evidence in a stratified alluvial aquifer. Biogeochemistry, doi: 10.1007/s10533-020-00637-y.
  • Visser, A.N., Wankel, S.D., Niklaus, P.A., Byrne, J.M., Kappler, A., Lehmann, M.F. (2020): Impact of reactive surfaces on the abiotic reaction between nitrite and ferrous iron and associated nitrogen and oxygen isotope dynamics. Biogeosciences 17, 4355-4374.
  • Weber, TKD, Diamantopoulos, E (2020). R package spsh: Estimation and Prediction of Parameters of Various Soil Hydraulic Property Models, version 1.1.0, https://CRAN.R-project.org/package=spsh.
  • Wimmer, B., Pattky, M., Gulu Zada, L., Meixner, M., Haderlein, S.B., Zimmermann, H.-P., Huhn, C. (2020): Capillary electrophoresis-mass spectrometry for the direct analysis of glyphosate: method development and application to beer beverages and environmental studies. Anal. Bioanal. Chem., 1-17, doi: 10.1007/s00216-020-02751-0.
  • Wirsching J, Pagel H, Ditterich F, Uksa M., Werneburg M., Zwiener C., Berner D., Kandeler E., Poll C. (2020): Biodegradation of pesticides at the limit: kinetics and microbial substrate use at low concentrations. Front Microbiol 11: 2107, doi: https://doi.org/10.3389/fmicb.2020.0210
  • Zhu, B., Wang, Z., Kanaparthi, D., Kublik, S., Ge, T., Casper, P., Schloter, M., Lueders, T. (2020): Long-read amplicon sequencing of nitric oxide dismutase (Nod) genes reveal diverse oxygencic denitrifiers in agricultural soils and lake sediments. Microbial Ecology doi: 10.1007/s00248-020-01482-0.
  • Zhu, B., Friedrich, B., Wang, Z., Táncsics, A., Lueders, T. (2020): Availability of nitrite and nitrate as electron acceptors modulates anaerobic toluene-degrading communities in aquifer sediments. Front. Microbiol. 11: 1867, doi: 10.3389/fmicb.2020.01867.
Related papers
  • Bai, Y., Mellage, A., Cirpka, O.A., Sun, T., Angenent, L., Haderlein, S.B., Kappler, A. (2020): AQDS and redox-active NOM enables microbial Fe(III)-mineral reduction at cm-scales. Environmental Science and Technology 54, 4131-4139.
  • Bai, Y., Subdiaga, E., Haderlein, S.B., Knicker, H., Kappler, A. (2020): High pH and anoxic conditions during soil organic matter extraction increases its electron exchange capacity and ability to stimulate microbial Fe(III) reduction by electron shuttling. Biogeosciences 17, 683-698.
  • Bai, Y., Sun, T., Angenent, L.T., Haderlein, S.B., Kappler, A. (2020): Electron hopping enables rapid electron transfer between quinone-/hydroquinone-containing organic molecules in microbial iron(III) mineral reduction. Environmental Science and Technology 54, 10646-10653.
  • Glodowska, M., Stopelli, E., Schneider, M., Rathi, B., Straub, D., Lightfoot, A., Kipfer, R., Berg, M., AdvectAs team members, Jetten, M., Kleindienst, S., Kappler, A. (2020): Arsenic mobilization in groundwater driven by microbial iron-dependent anaerobic oxidation of methane. Nature Communications Earth & Environment 1, 42.
  • Groh, J; Diamantopoulos, E; Duan, X; …; Weber, TKD; …; and H Gerke (2020) Crop growth and soil water fluxes at erosion-affected arable sites: Using weighing lysimeter data for model inter-comparison, Vadose Zone Journal, doi: 10.1002/vzj2.20058.
  • Spahr, S., Teixido, M., Sedlak, D.L., Luthy, R.G. (2020): Hydrophilic trace organic contaminants in urban stormwater: occurrence, toxicological relevance, and the need to enhance green strormwater infrastructure. Environ. Sci. Water Res. Technol. 6: 15-44, doi: 10.1039/C9EW00674E
  • Weber, TKD, Finkel, M, da Conceição Gonçalves, M, Vereecken, H, Diamantopoulos, E (2020) Measured soil hydraulic and physical properties and estimated soil hydraulic property model parameters, http://hdl.handle.net/10900.1/c2f45822-86ba-4338-b3e0-2d068f024e07.
  • Weber, T.K.D., Finkel, M., da Conceicáo Goncalves, M., Vereecken, H., Diamantopoulos, E. (2020): Pedotransfer function for the Brunswick soil hydraulic property model and comparison to the von Genuchten-Mualem model. Water Resour. Res. doi: 10.1029/2019WR026820.

2019

  • Chow R, Hao W, Jeremy B, Jürnjakob D, Wöhling T, Nowak W. (2019): Sensitivity of simulated hyporheic exchange to river bathymetry: The Steinlach River Test Site. Groundwater. 2019;57(3):378–91.
  • Chow, R., Bennett, J., Dugge, J., Wöhling, T., Nowak, W. (2019): Evaluating subsurface parameterization to simulate hyporheic exchange: The Steinlach River Test Site. Groundwater 58(1): 93-109, doi: 10.1111/gwat.12884.
  • Erdal, D., Baroni, G., Sanchez-Léon, E., Cirpka, O.A. (2019): The value of simplified models for spin up of complex models with an application to subsurface hydrology. Computers and Geosciences 126: 62-72, doi: 10.1016/j.cageo.2019.01.014.
  • Erdal, D., Cirpka, O.A. (2019): Global sensitivity analysis and adaptive stochastic sampling of a subsurface-flow model using active subspaces. Hydrol. Earth Syst. Sci. 23: 3787-3805, https://www.hydrol-earth-syst-sci.net/23/3787/2019/.
  • Eshonkulov, R., Poyda, A., Ingwersen, J., Wizemann, H.-D., Weber, T.K.D., Kremer, P., Högy, P., Pulatov, A., Streck, T. (2019): Evaluating multi-year, multi-site data on the energy balance closure of eddy-covariance flux measurements at cropland sites in southwestern Germany. Biogeosciences 16: 521-540, doi: 10.5194/bg-16-521-2019.
  • Glaser, C., Schwientek, M., Zarfl, C. (2019): Designing field-based investigations of organic micropollutant fate in rivers. Environ. Sci. Pollut. Res. 28: 28633-28649, doi: 10.1007/s11356-019-06058-1.
  • Guillet, G., Knapp, J.L.A., Merel,S., Cirpka, O.A., Grathwohl, P., Zwiener, C., Schwientek, M. (2019): Fate of wastewater contaminants in rivers: Using conservative-tracer based transfer functions to assess reactive transport. Science of the Total Environment 656: 1250-1260, doi: 10.1016/j.scitotenv.2018.11.379.
  • Höge, M., Guthke, A., Nowak, W. (2019): The hydrologist's guide to Bayesian model selection, averaging and combination. J. Hydrol. 572: 96-107, doi: 10.1016/j.jhydrol.2019.01.072.
  • Knapp, J.L.A., Osenbrück, K., Brennwald, M.S., Cirpka, O.A. (2019): In-situ mass spectrometry improves the estimation of stream reaeration from gas-tracer tests. Sci. Total Environ. 655: 1062-1070, doi: 10.1016/j.scitotenv.2018.11.300.
  • Lesch, M., Thiele, B., Streck, T., Grathwohl, P. (2019): In situ Monitoring von frisch applizierten Pflanzenschutzmitteln. Mitt Umweltchem Ökotox 25,2: 35-38.
  • Liu, Y., Zarfl, C., Basu, N., Cirpka, O.A. (2019): Turnover and legacy of sediment-associated PAH in a baseflow-dominated river. Sci. Total Environ. 671: 754-764.
  • Loschko, M., Wöhling, T., Rudolph, D.L. Cirpka, O.A. (2019): An electron-balance based approach to predict the decreasing denitrification potential of an aquifer. Groundwater 57 (6): 925-939, doi:10.1111/gwat.12876.
  • Marozava, S., Meyer, A. H., Pérez-de-Mora, A. Gharasoo, M., Zhuo, L., Wang, Z., Cirpka, O.A., Meckenstock, R. U., Elsner, M. (2019): Mass transfer limitation during slow anaerobic biodegradation of 2-methylnaphthalene. Environ.Sci. Technol. 53: 9481-9490, doi: 10.1021/acs.est.9b01152.
  • Marschmann, G.L., Pagel, H., Kügler, P., Streck, T. (2019): Equifinality, sloppiness and emergent structures of mechanistic soil biogeochemical models.Environmental Modelling & Software. Vol. 122, doi: 10.1016/j.envsoft.2019.104518.
  • Motavita, D.F., Chow, R., Guthke, A., Nowak, W. (2019): The Comprehensive Differential Split-Sample Test: A stress-test for hydrological model robustness under climate variability. J. Hydrol. 573: 501-515, doi: 10.1016/j.jhydrol.2019.03.054.
  • Müller, M.E., Vikstrom, S., König, M.,Schlichting, R., Zarfl, C., Zwiener, C., Escher, B.I. (2019): Mitochondrial toxicity of selected micropollutants, their mixtures, and surface water samples measured by the oxygen consumption rate in cells. Environ. Tox. and Chem. 5: 1000-1011, https://setac.onlinelibrary.wiley.com/doi/epdf/10.1002/etc.4396.
  • Straub, D., Blackwell, N., Langarica Fuentes, A., Peltzer, A., Nahnsen, S., Kleindienst, S. (2019): Interpretations of microbial community studies are biased by the selected 16S rRNA gene amplicon sequencing pipeline. bioRxiv, doi: 10.1101/2019.12.17.880468.
  • Subdiaga, E., Orsetti, S.Haderlein, S.B. (2019): Effects of sorption on redox properties of natural orgaic matter. Environ. Sci. and Technol. 53(24): 14319-14328.
  • Utom, A.U., Werban, U., Leven, C., Müller. C., Dietrich, P. (2019): Adaptive observation-based subsurface conceptual site modeling framework combining interdisciplinary methodologies: a case study on advancing the understanding of a groundwater nitrate plume occurrence. Environm. Science and Pollution Research 26: 15754-15766, doi: 10.1007/s11356-019-05048-7.
  • Weber, T.K.D., Durner, W., Streck, T., Diamantopoulos, E. (2019): A modular framework for modeling unsaturated soil hydraulic properties over the full moisture range. Water Resources Research 55, doi: 10.1029/2018WR024584.
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  • Neidhardt, H., Achten, F., Kern, S., Schwientek, M., Oelmann, Y. (2019): Phosphorus pool composition in soils and sediments of transitional ecotones under the influence of agriculture. Journal of Environmental Quality 48 (5): 1325-1335. doi:10.2134/jeq2019.01.0012.

2018

  • Gauglitz, G., Wimmer, B., Melzer, T., Huhn, C. (2018): Glyphosate analysis using sensors and electromigration separation techniques as alternatives to gas or liquid chromatography. Anal. Bioanal Chem 410: 725-746, doi:10.1007/s00216-017-0679-x.
  • Grathwohl, P. und Rügner, H. (2018): Das Schadstoff-Forschungsprojekt CAMPOS. TÜBINGER BLÄTTER 2018.
  • Höge, M., Wöhling, T., Nowak, W. (2018): A primer for model selection: The decisive role of model complexity. Water Resources Research 54(3): 1688-1715, doi: 10.1002/2017WR021902.
  • Huhn, C. (2018): More and enhanced glyphosate analysis is needed. Anal. Bioanl. Chem 410: 3041-3045, doi:10.1007/s00216-018-1000-3.
  • Knapp, J.L.A., Cirpka, O.A. (2018): A critical assessment of relating resazurin-resorufin experiments to reach-scale metabolism in lowland streams. J. Geophys. Res. Biogeosci. 123(12): 3538-3555, doi: 10.1029/2018JG004797.
  • Liu, Y., Zarfl, C., Basu, N.B., Schwientek, M., Cirpka, O. A. (2018): Contributions of catchment and in-stream processes to suspended sediment transport in a dominantly groundwater-fed catchment. Hydrol. Earth Syst. Sci., 22: 3903-3921, doi:10.5194/hess-22-3903-2018.
  • Loschko, M., Wöhling, T., Rudolph, D.L., Cirpka, O.A. (2018): Accounting for the Decreasing Reaction Potential of heterogeneous aquifers in a Stochastic Framework of Aquifer-Scale Reactive Transport. Water Resour. Res. 54(1): 442-463, doi:10.1002/2017WR021645.
  • Müller, M.E., Escher, B.I., Schwientek, M., Werneburg, M., Zarfl, C., Zwiener, C. (2018): Combining in vitro reporter gene bioassays with chemical analysis to assess changes in the water quality along the Ammer River, Southwestern Germany. Environ. Sci. Eur. 30: 20, doi:10.1186/s12302-018-0148-y.
  • Pinheiro, M., Pagel, H., Poll, C., Ditterich, F., Garnier, P., Streck, T., Kandeler, E., Gonod, L. V. (2018): Water flow drives small scale biogeography of pesticides and bacterial pesticide degraders - A microcosm study using 2,4-D as a model compound. Soil Biol. and Biochem. 127: 137-147, doi:10.1016/j.soilbio.2018.09.024.
  • Schaedler, F., Kappler, A., Schmidt, C. (2018): A revised iron extraction protocol for environmental samples enriched in nitrate, nitrile and carbonate. Geomicrobio. J. 35: 23-30.
  • Visser, A.-N. (2018): Nitrogen and oxygen Isotope Fractionation Systematics: Implications for Denitrification Mechanismus in Laboratory Batch Cultures & a Groundwater Microbial Community. Dissertation, Tübingen.
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  • Nasrabadi, T., Rügner, H., Schwientek, M., Bennett, J., Valipour, S.F., Grathwohl, P. (2018): Bulk metal concentrations versus total suspended solids in rivers: Time-invariant & catchment-specific relationships. PLOS ONE 13(1), doi:10.1371/journal.pone.0191314.
  • Wallach, D., Martre, P., Liu, B., …, Streck, T., …, et al. (2018): Multi-model ensembles improve predictions of crop-environment-management interactions. Glob. Change Biol. 24:5072–5083.

2017

  • Schwientek, M., Rügner, H., Scherer U., Rode M., Grathwohl P. (2017): A parsimonious approach to estimate PAH concentrations in river sediments of anthropogenically impacted watersheds. Science of the Total Environm. 601-602: 636-645, doi:10.1016/j.scitotenv.2017.05.208.
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  • Seidensticker, S., Zarfl, C., Cirpka, O.A., Fellenberg, G., Grathwohl, P. (2017): Shift in mass transfer of wastewater contaminants from microplastics in presence of dissolved substances. Environ. Sci. Technol. 51(21): 12254-12263.