nocoRNAc example data for S. coelicolor
The data can be copied to nocoRNAc's data directory.

The following command line can be used to predict ncRNA transcripts for S. coelicolor:
java -Xmx1G -jar nocoRNAc.jar -genomeFastaFile data/NC_003888.fasta -ncRNAcrdfile data/NC_003888_RNAz_res.gff -proteinTableFile data/NC_003888.ptt -gffOutFile <filename>


Description of input files:

NC_003888_RNAz_res.gff
ncRNA loci predicted by RNAz
to be used with command line argument
-ncRNAcrdFile

NC_003888_RNAz_res.crd
same as above (different format)

NC_003888.ptt
protein table file for S. coelicolor (NCBI)
to be used with command line argument
-proteinTableFile

NC_003888.fasta
genome sequence of S. coelicolor (NCBI)
to be used with command line argument
-ncRNAcrdFile

