Simon Hackl
PhD Student
Integrative Transcriptomics
Interfaculty Institute for Bioinformatics and Medical Informatics (IBMI)
Sand 14
72076 Tübingen
+49 (0)7071 – 29-70447
E-mail: simon.hackl[at]uni-tuebingen.de
Research topics
- Genome and protein diversity and conservation in pathogenic bacterial strains and species with a focus on outer membrane proteins and antimicrobial resistance genes:
- MUSIAL: Visualization and analysis software to infer genome, gene and protein variability from multiple genotyping datasets.
- PRESERVE: Pipeline for the survey of protein conservation to identify antibody targets.
- Collaboration with the TrepoGEN initiative to unravel the genomic landscape of Treponema pallidum and to develop an effective syphilis vaccine.
- Analysis of the post-translational modification landscape in bacteria:
- PTMVision: Interactive web platform for exploratory visual analysis of post-translational protein modifications.
Short Biography
- Since 2023, PhD Representative of the Institute for Bioinformatics and Medical Informatics (IBMI)
- Since 2022, PhD Candidate and Research Assistant in the “Integrative Transcriptomics” research group, University of Tübingen
- 2019 – 2022 MSc. Bioinformatics, University of Tübingen
- 2015 – 2019 BSc. Bioinformatics, University of Tübingen
Teaching Assistance
Summer 24 | Lecture "Grundlagen der Bioinformatik" |
Winter 23/24 | Proseminar "Grundlagen der Bioinformatik" |
Summer 23 | Lecture "Grundlagen der Bioinformatik" |
Winter 22/23 | Lecture "Advances in Computational Transcriptomics" |
Summer 22 | Team Project "Serious Game: RNA Secondary Structure Prediction" |
Winter 21/22 | Lecture "Komplexitätstheorie" |
Summer 21 | Lecture "Theoretische Informatik" |
Winter 20/21 | Lecture "Komplexitätstheorie" |
Summer 20 | Lecture "Theoretische Informatik" |
Publications
see here for Google scholar profile