Acevedo-Garcia J, Gruner K, Reinstädler A, Kemen A, Kemen E, Cao L, Takken FLW, Reitz MU, Schäfer P, O'Connell RJ, Kusch S, Kuhn H, Panstruga R (2017) The powdery mildew-resistant Arabidopsis mlo2 mlo6 mlo12 triple mutant displays altered infection phenotypes with diverse types of phytopathogens. Sci Rep. 7(1):9319. doi: 10.1038/s41598-017-07188-7

Kruse J, Doehlemann G, Kemen E, Thines M (2017) Asexual and sexual morphs of Moesziomyces revisited. IMA Fungus. 8(1):117-129. doi:10.5598/imafungus.2017.08.01.09

Prince DC, Rallapalli G, Xu D, Schoonbeek HJ, Çevik V, Asai S, Kemen E, Cruz-Mireles N, Kemen A, Belhaj K, Schornack S, Kamoun S, Holub EB, Halkier BA, Jones JD (2017) Albugo-imposed changes to tryptophan-derived antimicrobial metabolite biosynthesis may contribute to suppression of non-host resistance to Phytophthora infestans in Arabidopsis thaliana. BMC Biol. 15(1):20  Link

Kroll S, Agler MT, Kemen E. (2017) Genomic dissection of host-microbe and microbe-microbe interactions for advanced plant breeding. Curr Opin Plant Biol. 36:71-78 PMID: 28235716,  DOI: 10.1016/j.pbi.2017.01.004

Dombrowski N, Schlaeppi K, Agler MT, Hacquard S, Kemen E, Garrido-Oter R, Wunder J, Coupland G, Schulze-Lefert P. (2016) Root microbiota dynamics of perennial Arabis alpina are dependent on soil residence time but independent of flowering time. ISME J. 11(1):43-55 Link

Ruhe J, Agler MT, Placzek A, Kramer K, Finkemeier I, Kemen E. (2016) Obligate biotroph pathogens of the genus Albugo are better adapted to active host defense compared to niche competitors. Front Plant Sci. doi: 10.3389/fpls.2016.00820

Hacquard S, Kracher B, Hiruma K, Münch PC, Garrido-Oter R, Thon MR, Weimann A, Damm U, Dallery J-F, Hainaut M, Henrissat B, Lespinet O, Sacristán S, Ver Loren van Themaat E, Kemen E, McHardy AC, Schulze-Lefert P, O’Connell RJ. (2016) Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi. Nat Commun. 7:11362.

Walter S, Ali S, Kemen E, Nazari K, Bahri BA, Enjalbert J, Hansen JG, Brown JK, Sicheritz-Pontén T, Jones J, de Vallavieille-Pope C, Hovmøller MS, Justesen AF. (2016) Molecular markers for tracking the origin and worldwide distribution of invasive strains of Puccinia striiformis. Ecol Evol. doi: 10.1002/ece3.2069

Agler MT, Ruhe J, Kroll S, Morhenn C, Kim S, Weigel D, Kemen E. (2016) Microbial hub taxa link host and abiotic factors to plant microbiome variation. PLoS Biol. 14(1): e1002352 PMCID: PMC4720289,  DOI: 10.1371/journal.pbio.1002352

Sharma R, Xia X, Cano LM, Evangelisti E, Kemen E, Judelson H, Oome S, Sambles C, van den Hoogen DJ, Kitner M, Klein J, Meijer HJ, Spring O, Win J, Zipper R, Bode HB, Govers F, Kamoun S, Schornack S, Studholme DJ, Van den Ackerveken G, Thines M. (2015) Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora. BMC Genomics. 16(1):741

McMullan M, Gardiner A, Bailey K, Kemen E, Ward BJ, Cevik V, Robert-Seilaniantz A, Schultz-Larsen T, Balmuth A, Holub E, van Oosterhout C and Jones JD. (2015) Evidence for suppression of immunity as a driver for genomic introgressions and host range expansion in races of Albugo candida, a generalist parasite. eLIFE. 4. doi: 10.7554/eLife.04550.

Kemen A, Agler MT, Kemen E. (2015) Host-microbe and microbe-microbe interactions in the evolution of obligate plant parasitism. New Phytol. 206(4): 1207-1228 PMID: 25622918, DOI: 10.1111/nph.13284

Kemen E. (2014) Microbe-microbe interactions determine oomycete and fungal host colonization. Curr Opin Plant Biol. 20, 75-81 PMID: 24845577,  DOI: 10.1016/j.pbi.2014.04.005

Rallapalli G, Kemen E, Robert-Seilaniantz A, Segonzac C, Etherington GJ, Sohn KH, Maclean D, Jones JD. (2014). EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics. BMC Genomics. 15, 341

Kemen E, Kemen A, Ehlers A, Voegele R, Mendgen K. (2013) A novel structural effector from rust fungi is capable of fibril formation. Plant J. 75(5): 767-780

Pretsch K, Kemen A, Kemen E, Geiger M, Mendgen K, Voegele R. (2013) The rust transferred proteins – a new family of effector proteins exhibiting protease inhibitor function. Mol Plant Pathol. 14:96-107

Kemen E, Jones JD. (2012) Obligate biotroph parasitism: can we link genomes to lifestyles? Trends Plant Sci. 17:448-457

Gan X, Stegle O, Behr J, Steffen JG, Drewe P, Hildebrand KL, Lyngsoe R, Schultheiss SJ, Osborne EJ, Sreedharan VT, Kahles A, Bohnert R, Jean G, Derwent P, Kersey P, Belfield EJ, Harberd NP, Kemen E, Toomajian C, Kover PX, Clark RM, Rätsch G, Mott R. (2011) Multiple reference genomes and transcriptomes for Arabidopsis thaliana. Nature. 477:419-423.

Kemen E, Gardiner A, Schultz-Larsen T, Kemen AC, Balmuth AL, Robert-Seilaniantz A, Bailey K, Holub E, Studholme DJ, MacLean D, Jones JDG. (2011) Gene gain and loss during evolution of obligate parasitism in the white rust pathogen of Arabidopsis. PLoS Biol. 9:e1001094.

Kemen E, Mendgen K, Voegele RT. (2011) Immunolocalization of pathogen effectors. Methods Mol Biol. 712:211-25.

Baxter L, Tripathy S, Ishaque N, Boot N, Cabral A, Kemen E, Thines M, Ah-Fong A, Anderson R, Badejoko W, Bittner-Eddy P, Boore JL, Chibucos MC, Coates M, Dehal P, Delehaunty K, Dong S, Downton P, Dumas B, Fabro G, Fronick C, Fuerstenberg SI, Fulton L, Gaulin E, Govers F, Hughes L, Humphray S, Jiang RH, Judelson H, Kamoun S, Kyung K, Meijer H, Minx P, Morris P, Nelson J, Phuntumart V, Qutob D, Rehmany A, Rougon-Cardoso A, Ryden P, Torto-Alalibo T, Studholme D, Wang Y, Win J, Wood J, Clifton SW, Rogers J, Van den Ackerveken G, Jones JD, McDowell JM, Beynon J, Tyler BM. (2010) Signatures of adaptation to obligate biotrophy in the Hyaloperonospora arabidopsidis genome. Science. 330(6010):1549-51.

Studholme DJ, Kemen E, MacLean D, Schornack S, Aritua V, Thwaites R, Grant M, Smith J, Jones JD. (2010) Genome-wide sequencing data reveals virulence factors implicated in banana Xanthomonas wilt. FEMS Microbiol Lett. 310(2):182-92.

Farrer RA, Kemen E, Jones JD, Studholme DJ. (2009) De novo assembly of the Pseudomonas syringae pv. syringae B728a genome using Illumina/Solexa short sequence reads. FEMS Microbiol Lett. 291(1):103-11.

Almeida NF, Yan S, Lindeberg M, Studholme DJ, Schneider DJ, Condon B, Liu H, Viana CJ, Warren A, Evans C, Kemen E, Maclean D, Angot A, Martin GB, Jones JD, Collmer A, Setubal JC, Vinatzer BA. (2009) A draft genome sequence of Pseudomonas syringae pv. tomato T1 reveals a type III effector repertoire significantly divergent from that of Pseudomonas syringae pv. tomato DC3000. Mol Plant Microbe Interact. Jan;22(1):52-62.

Kucheryava N, Bowen JK, Sutherland PW, Conolly JJ, Mesarich CH, Rikkerink EH, Kemen E, Plummer KM, Hahn M, Templeton MD. (2008) Two novel Venturia inaequalis genes induced upon morphogenetic differentiation during infection and in vitro growth on cellophane. Fungal Genet Biol. 45(10):1329-39. Epub 2008 Jul 24.

Kemen E, Kemen AC, Rafiqi M, Hempel U, Mendgen K, Hahn M, Voegele RT. (2005) Identification of a protein from rust fungi transferred from haustoria into infected plant cells. Mol Plant Microbe Interact. 18(11):1130-9.

Kemen E, Hahn M, Mendgen K, Struck C. (2005) Different resistance mechanisms of Medicago truncatula ecotypes against the rust fungus Uromyces striatus. Phytopathology. 95(2):153-7.

Wirsel SG, Runge-Froböse C, Ahrén DG, Kemen E, Oliver RP, Mendgen KW. (2002) Four or more species of Cladosporium sympatrically colonize Phragmites australis. Fungal Genet Biol. 35(2):99-113.