J.C. Geue, C.I. Vágási, M. Schweizer, P.L. Pap, H.A. Thomassen (2016). Environmental selection is a main driver of divergence in house sparrows (Passer domesticus) in Romania and Bulgaria. Ecology and Evolution: DOI: 10.1002/ece3.2509.
H.A. Thomassen, A. Freedman, D.M. Brown, W. Buermann, D.K. Jacobs (2013). Regional differences in seasonal timing of rainfall discriminate between genetically distinct East African giraffe taxa. PloS ONE 8: e77191.
H.A. Thomassen, T. Fuller, W. Buermann, B. Milá, C.M. Kieswetter, P. Jarrín-V., S.E. Cameron, E. Mason, R. Schweizer, J. Schlunegger, J. Chan, O. Wang, M. Peralvo, C.J. Schneider, C.H. Graham, J.P. Pollinger, S. Saatchi, R.K. Wayne, T.B. Smith (2011). Mapping evolutionary process: a multi-taxa approach to conservation prioritization. Evolutionary Applications 4: 397-413.
R.J. Harrigan*, H.A. Thomassen*, W. Buermann, R. Cummings, M.E. Kahn, T.B. Smith (2010). Economic conditions predict prevalence of West Nile virus. PloS ONE 5: e15437. (*these authors contributed equally to this work)
H.A. Thomassen, Z.A. Cheviron, A.H. Freedman, R.J. Harrigan, R.K. Wayne, T.B. Smith (2010). Spatial modeling and landscape-level approaches for visualizing intra-specific variation. Molecular Ecology 19: 3532-3548. (Invited Review)