GenomeRing: alignment visualization based on SuperGenome coordinates
With GenomeRing we present two complementary approaches to tackle the problem of quick and comprehensive interpretation of all important genomic variations together with various supplemental data. Our SuperGenome concept allows for the computation of a common coordinate system for all genomes in a multiple alignment. This enables the consistent placement of genome annotations in the presence of insertions, deletions, and rearrangements. The SuperGenome concept comes with our GenomeRing visualization which, based on the SuperGenome, creates an interactive plot of the multiple genome alignment in a circular layout.
Example for the GenomeRing Visualization for 4 Campylobacter jejuni strains.
As a stand-alone Java FX version. You need at least Java 11 to use this version. For use of the stand-alone version, basically follow the instructions below.
GenomeRing is integrated into Mayday. After starting Mayday, you can open GenomeRing with an example alignment via the “Mayday” menu.
