antiSMASH v4 - Antibiotics & Secondary Metabolite Analysis Shell

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antiSMASH allows the rapid genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genomes. It is currently the Gold standard in genome mining and the product of a collaborative effort between the Department of Microbial Physiology and Groningen Bioinformatics Centre of the University of Groningen, the Department of Microbiology / Biotechnology of the University of Tübingen, the Synthetic Biology and Computational and Evolutionary Biology groups at the Faculty of Life Sciences at the University of Manchester and the Department of Bioengineering and Therapeutic Sciences at the University of California, San Francisco.

References

antiSMASH 4.0-improvements in chemistry prediction and gene cluster boundary identification.

Blin K, Wolf T, Chevrette MG, Lu X, Schwalen CJ, Kautsar SA, Suarez Duran HG, de Los Santos ELC, Kim HU, Nave M, Dickschat JS, Mitchell DA, Shelest E, Breitling R, Takano E, Lee SY, Weber T, Medema MH.

Nucleic Acids Res. 2017 Apr 28. doi: 10.1093/nar/gkx319.

antiSMASH 3.0 — a comprehensive resource for the genome mining of biosynthetic gene clusters

Tilmann Weber, Kai Blin, Srikanth Duddela, Daniel Krug, Hyun Uk Kim, Robert Bruccoleri, Sang Yup Lee, Michael A. Fischbach, Rolf Müller, Wolfgang Wohlleben, Rainer Breitling, Eriko Takano & Marnix H. Medema

Nucleic Acids Research (2015) doi: 10.1093/nar/gkv437.

antiSMASH 2.0 — a versatile platform for genome mining of secondary metabolite producers.

Kai Blin, Marnix H. Medema, Daniyal Kazempour, Michael A. Fischbach, Rainer Breitling, Eriko Takano, & Tilmann Weber

Nucleic Acids Research (2013) doi: 10.1093/nar/gkt449.

antiSMASH: Rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters.

Marnix H. Medema, Kai Blin, Peter Cimermancic, Victor de Jager, Piotr Zakrzewski, Michael A. Fischbach, Tilmann Weber, Rainer Breitling & Eriko Takano

Nucleic Acids Research (2011) doi: 10.1093/nar/gkr466