Research Group Harter

Preprints on bioRxiv

Szmitkowska A, Cuyacot AR, Pekárová B, Žd’árská M, Houser J, Komárek J, Jaseňáková Z, Jayasree A, Heunemann M, Ubogoeva E, Spyroglou I, Trtilek M, Mironova V, Harter K, Zemlyanskaya E, Žídek L, Wimmerová M, Hejátko J (2022). AHK5 mediates ETR1-initiated multistep phosphorelay in Arabidopsis. bioRxiv 2021.09.16.460643; doi: https://doi.org/10.1101/2021.09.16.460643.

Yamoune A, Zdarska M, Korytarova A, Depaepe T, Korytarova A, Skalak J, Berendzen KW, Mira-Rodado V, Tarr P, Spackova E, Badurova L, Parizkova B, Franczyk A, Kovacova I, Pernisova M, Novak O, Meyerowitz EM, Harter K, Van der Straeten D, Hejatko J (2022). Cytokinins regulate spatially-specific ethylene production to control root growth in Arabidopsis. bioRxiv; https://doi.org/10.1101/2023.01.07.52279.

 

Wanner J, Kuhn Cuellar L, Rausch L, Berendzen KW, Wanke F, Gabernet G, Harter K, Nahnsen S (2023). nf-root: a best-practice pipeline for deep learning-based analysis of apoplastic pH in microscopy images of developmental zones in plant root tissue. bioRxiv; https://doi.org/10.1101/2023.01.16.524272.

 

Franzisky BL, Sölter J, Xue C, Harter K, Stahl M, Geilfus C-M (2023). In planta exploitation of leaf apoplastic compounds: a window of opportunity for spatiotemporal studies of apoplastic metabolites, hormones and physiology. bioRxiv 2023.04.05.535553; doi: https://doi.org/10.1101/2023.04.05.535553.

2023

Rammler T, Wackenhut F, Rapp J, zur Oven-Krockhaus S, Forchhammer K, Meixner AJ, Harter K (2023). Analysis of fast fluorescence kinetics of a single cyanobacterium trapped in an optical microcavity. Plants 12, 607; https://doi.org/10.3390/plants12030607

Wallner E-S, Tonn N, Wanke F, Lopez-Salmeron V, Gebert M, Wenzl C, Lohmann JU, Harter K, Greb T (2023). OBERON3 and SUPPRESSOR OF MAX2 1-LIKE proteins form a regulatory module specifying phloem identity. Nat Comm 14, 2128; https://doi.org/10.1038/s41467-023-37790-5

Aryal B, Xia J, Hu Z, Tsering T, Liu J, Huynh J, Fukao Y, Glöckner N, Huang H-Y, Sancho-Andres G, Pakula K, Gorzolka K, Zwiewka M, Nodzynski T, Harter K, Sanchez-Rodriguez C, Jasinski M, Rosahl S, Geisler M (2023). An LRR receptor kinase controls ABC transporter substrate preferences during plant growth-defense decisions. Curr Biol 33, 2008–2023, e8; https://doi.org/10.1016/j.cub.2023.04.029

2022

Wang J, Xi L, Wu XN, König S, Rohr L, Neumann T, Harter K, Schulze WX (2022). PEP7 is a ligand for the receptor kinase SIRK1 to regulate aquaporins and root growth. Molecular Plant, https://doi.org/10.1016/j.molp.2022.09.016.

Xu X, Hummel S, Harter K, Kolukisaoglu Ü, Riemann M, Nick P (2022). The minus-end-directed kinesin OsDLK shuttles to the nucleus and modulates the expression of cold-box factor 4. Int J Mol Sci 23, 6291; https://doi.org/10.3390/ijms23116291

Fonseca ML, Ramirez-Pinzon MA, McNeil KN, Guevara M, Gomez-Gutierrez LM, Harter K, Mongui A, Stevenson PR (2022). Dietary preferences and feeding strategies of Colombian highland woolly monkeys. Scientific Reports 12, 14364; doi:https://doi.org/10.1038/s41598-022-17655-5

Wang J, Xi L, Wu XN, König S, Rohr L, Neumann T, Weber J, Harter K, Schulze W (2022). PEP7 acts as a peptide ligand for the receptor kinase SIRK1 to regulate aquaporin-mediated water influx and lateral root growth. Molecular Plant. doi https://doi.org/10.1016/j.molp.2022.09.016

Großeholz R, Wanke F, Rohr L, Glöckner N, Rausch L,  Scholl S, Scacchi E, Spazierer A J, Shabala L, Shabala S, Schumacher K, Kummer U, Harter K (2022). Computational modeling and quantitative physiology reveal central parameters for brassinosteroid-regulated early cell physiological processes linked to elongation growth of the Arabidopsis root. eLife. doi: https://doi.org/10.7554/eLife.73031

Glöckner N, Zur Oven-Krockhaus S, Rohr L, Wackenhut F, Burmeister M, Wanke F, Holzwart E, Meixner AJ, Wolf S, Harter K (2022) Three-Fluorophore FRET Enables the Analysis of Ternary Protein Association in Living Plant Cells. Plants. https://doi.org/10.3390/plants11192630

Rammler T, Wackenhut F, Zur Oven-Krockhaus S, Rapp J, Forchhammer K, Harter K, Meixner AJ (2022). Strong coupling between an optical microcavity and photosystems in single living cyanobacteria. J Biophotonics. https://doi.org/10.1002/jbio.202100136.

Kuhn Cuellar L, Friedrich A, Gabernet G, de la Garza L, Fillinger S, Seyboldt A, Koch T, Zur Oven-Krockhaus S, Wanke F, Richter S, Thaiss WM, Horger M, Malek N, Harter K, Bitzer M, Nahnsen S (2022). A data management infrastructure for the integration of imaging and omics data in life sciences. BMC Bioinformatics. https://doi.org/10.1186/s12859-022-04584-3.

2021

Pruitt RN, Locci F, Wanke F, Zhang L, Saile SC, Joe A, Karelina D, Hua C, Fröhlich K, Wan WL, Hu M, Rao S, Stolze SC, Harzen A, Gust AA, Harter K, Joosten MHAJ, Thomma BPHJ, Zhou JM, Dangl JL, Weigel D, Nakagami H, Oecking C, Kasmi FE, Parker JE, Nürnberger T (2021). The EDS1-PAD4-ADR1 node mediates Arabidopsis pattern-triggered immunity. Nature. https://doi.org/10.1038/s41586-021-03829-0.

Tessi TM, Brumm S, Winklbauer E, Schumacher B, Pettinari G, Lescano I, González CA, Wanke D, Maurino VG, Harter K, Desimone M (2021). Arabidopsis AZG2 transports cytokinins in vivo and regulates lateral root emergence. New Phytol. https://doi.org/10.1111/nph.16943.

Krieger N, Pastryk K-F, Forchhammer K, Kolukisaoglu Ü (2021). Arabidopsis PII Proteins Form Characteristic Foci in Chloroplasts Indicating Novel Properties in Protein Interaction and Degradation. International Journal of Molecular Sciences. https://doi.org/10.3390/ijms222312666.

Gilbert M, Li Z, Wu XN, Rohr L, Gombos S, Harter K, Schulze WX (2021). Comparison of path-based centrality measures in protein-protein interaction networks revealed proteins with phenotypic relevance during adaptation to changing nitrogen environments. J Proteomics. https://doi.org/10.1016/j.jprot.2021.104114.

2020

Großeholz R, Feldman-Salit A, Wanke F, Schulze S, Glöckner N, Kemmerling B, Harter K, Kummer U (2020). Specifying the role of BAK1-interacting receptor-like kinase 3 in brassinosteroid signaling. J Integr Plant Biol. https://doi.org/10.1111/jipb.12803.

Hofmann A, Müller S, Drechsler T, Berleth M, Caesar K, Rohr L, Harter K, Groth G (2020). High-Level Expression, Purification and Initial Characterization of Recombinant Arabidopsis Histidine Kinase AHK1. Plants (Basel). https://doi.org/10.3390/plants9030304.

Holzwart E, Wanke F, Glöckner N, Höfte H, Harter K, Wolf S (2020). A Mutant Allele Uncouples the Brassinosteroid-Dependent and Independent Functions of BRASSINOSTEROID INSENSITIVE 1. Plant Physiol. https://doi.org/10.1104/pp.19.00448.

Kolukisaoglu Ü (2020). D-amino acids in plants: Sources, metabolism and functions
International Journal of Molecular Sciences https://doi.org/10.3390/ijms21155421.

Jander G, Kolukisaoglu U, Stahl M, Yoon GM (2020). Editorial: Physiological Aspects of Non-proteinogenic Amino Acids in Plants. Frontiers in Plant Science 11: doi: https://doi.org/10.3389/fpls.2020.519464.

2019

Hertlein V, Flores-Romero H, Das KK, Fischer S, Heunemann M, Calleja-Felipe M, Knafo S, Hipp K, Harter K, Fitzgerald JC, García-Sáez AJ (2019). MERLIN: a novel BRET-based proximity biosensor for studying mitochondria-ER contact sites. Life Sci Alliance. https://doi.org/10.26508/lsa.201900600.

Großeholz R, Feldman-Salit A, Wanke F, Schulze S, Glöckner N, Kemmerling B, Harter K, Kummer U (2019). Specifying the role of BAK1-interacting receptor-like kinase 3 (BIR3) as negative regulator in brassinosteroid signaling by computational modeling. J Int Plant Biol, https://doi.org/10.1111/jipb.12803.

Wallmeroth N, Jeschke D, Slane D, Nägele J, Veerabagu M, Mira-Rodado V, Berendzen KW (2019). ARR22 overexpression can suppress plant two-component regulatory systems. PLoS ONE, https://doi.org/10.1371/journal.pone.0212056.

Garg A, Kirchler T, Fillinger S, Wanke F, Stadelhofer B, Stahl M, Chaban C (2019). Targeted manipulation of bZIP53 DNA-binding properties influences Arabidopsis metabolism and growth. J Exp Bot 70, 5659–5671; doi:10.1093/jxb/erz309.

Holzwart E, Wanke F, Glöckner N, Höfte H, Harter K, Wolf S (2019). A novel mutant allele uncouples brassinosteroid-dependent and independent functions of BRI1. Plant Physiol., doi: https://doi.org/10.1104/pp.19.00448.

Hertlein V, Flores-Romero H, Das KK, Fischer S, Heunemann M, Calleja-Felipe M, Knafo S, Hipp K, Harter K, Fitzgerald J, García-Sáez AJ (2019). Novel BRET-based proximity biosensor for the study mitochondria-ER contact sites. Life Science Alliance, doi: 10.26508/lsa.201900600.

Mohrholz A, Hequan S, Glöckner N, Hummel S, Kolukisaoglu Ü, Schneeberger K, Harter K (2019). The striking flower-in-flower phenotype of Arabidopsis thaliana Nossen (No-0) is caused by a novel LEAFY allele. Plants 8, 599; doi:10.3390/plants8120599.

Mira-Rodado V (2019). New insights into multistep-phosphorelay (MSP)/two-component system (TCS) regulation: Are plants and bacteria that different? Plants 8, 590; doi:10.3390/plants8120590.

Suarez J, Hener C, Lehnhardt VA, Hummel S, Stahl M, Kolukisaoglu Ü (2019). AtDAT1 is a key enzyme of D-amino acid stimulated ethylene production in Arabidopsis thaliana. Front Plant Sci. 0, 1609; doi: 10.3389/fpls.2019.01609.

2018

Früholz S, Fäßler F, Kolukisaoglu Ü, Pimpl P (2018). Nanobody-triggered lockdown of VSRs reveals ligand reloading in the Golgi. Nat Commun 13;9(1):643. doi: 10.1038/s41467-018-02909-6.

Hener C, Hummel S, Suarez J, Stahl M, Kolukisaoglu Ü (2018). D-Amino acids are exuded by Arabidopsis thaliana roots to the rhizosphere. Int J Mol Sci 19(4). pii: E1109. doi: 10.3390/ijms19041109.

Shanks C, Hecker A, Cheng C-Y, Brand L, Collani S, Schmid M, Schaller GE, Wanke D, Harter K, Kieber (2018). Role of BASIC PENTACYSTEIENE transcription factors in a sub-set of cytokinin signaling responses. Plant J, doi.org/10.1111/tpj.13962.

Arongaus AB, Chen S, Pireyre M, Glöckner N, Galvão VC, Albert A, Fankhauser C, Harter K, Ulm R (2018). RUP2 is required for photoperiodic flowering in Arabidopsis. Genes & Development 32, 1332–1343. doi:10.1101/gad.318592.118

Holzwart E, Huerta AI, Glöckner N, Gómez BG, Wanke F, Augustin S, Askani JC, Schürholz A-K, Harter K, Wolf S (2018). BRI1 controls vascular cell fate in the Arabidopsis root through RLP44 and phytosulfokine signalling. Proc Natl Acad Science USA, www.pnas.org/cgi/  doi/ 10.1073/pnas.1814434115.

Peethambaran PK, Glenz R, Höninger S, Islam S, Hummel S, Harter K, Kolukisaoglu Ü, Meynard D, Guiderdoni E, Nick P, Riemann M (2018). Salt-inducible expression of OsJAZ8 improves resilience against salt-stress. BMC Plant Biol 18, e311. doi:10.1186/s12870-018-1521-0

2017

Peter S, zur Oven-Krockhaus S, Veerabagu M, Mira-Rodado V, Berendzen KW, Meixner AJ, Harter K, Schleifenbaum F (2017). Chimeric autofluorescent proteins as photophysical model system for multicolor bimolecular fluorescence complementation (mBiFC). J Phys Chem B, doi: 10.1021/acs.jpcb.6b11623.

Wallmeroth N, Anastasia AK, Harter K, Berendzen KW, Mira-Rodado V (2017). Arabidopsis response regulator 22 inhibits cytokinin-regulated gene transcription in vivo. Protoplasma. 2017 doi: https://doi.org/10.1007/s00709-016-0944-4.

2016

Dautel R, Wu XN, Heunemann M, Schulze WX, Harter K (2016). The sensor histidine kinases AHK2 and AHK3 proceed into multiple serine/threonine/tyrosine phosphorylation pathways in Arabidopsis thaliana. Mol Plant 9, 182-186. doi:10.1016/j.molp.2015.10.002

Wallmeroth N, Anastasia AK, Harter K, Berendzen KW, Mira-Rodado V (2016). Arabidopsis response regulator 22 inhibits cytokinin-regulated gene transcription in vivo. Protoplasma, doi: 10.1007/ss00709-016-0944-4.

Li C, Li J, Chong K, Harter K, Lee Y, Leung J, Martinoia E, Matsuoka M, Offringa R, Qu L, Schroeder J, Zhao Y (2016). Toward a molecular understanding of plant hormone actions. Mol Plant 9, 1-3. doi:10.1016/j.molp.2015.12.006

Fischer SM, Böser A, Hirsch JP, Wanke D (2016). Quantitative analysis of protein-DNA interaction by qDPI-ELISA. Methods Mol Biol 1482, doi: 10.1007/978-1-4939-6396-6_4.

Eisele JF, Fäßler F, Bürgel PF, Chaban C (2016). A rapid and simple method for microscopy-based stomata analysis. PLoS One, 11, e0164576; doi: 10.1371/journal.pone.0164576.

Lechner M, Gröger A, Harter, K (2015/2016). Die Frucht der Arbeit. Pflanzennutzung im Spannungsfeld der Globalisierung. Dauerausstellung in den Botanischen Gärten München-Nymphenburg und Tübingen.

2015

Ganguly D, Harter K, Pogson B, Albrecht-Borth V (2015). Phytochrome B, PIF4 and SCO3 appear to interact via epistatic, synergistic and antagonistic epistatic pathways, on development and chloroplast biogenesis. Functional Plant Biology 42, 676-686.

Hecker A, Brand LH, Peter S, Simoncello N, Kilian J, Harter K, Gaudin V, Wanke D (2015). Arabidopsis BPC6 interacts with LHP1 at PRE-like GAGA DNA motifs. Plant Physiol 168, 130-141. doi:10.1104/pp.15.00409

Hecker A, Wallmeroth N, Peter S, Blatt MR, Harter K, Grefen C (2015). Binary 2in1 vectors improve in planta (co-) localisation and dynamic protein interaction studies. Plant Physiol 168, 776-787. doi:10.1104/pp.15.00533

Ladwig F, Dahlke R, Stührwohldt N, Hartmann J, Harter K, Sauter M (2015). Phytosulfokine regulates growth in Arabidopsis through a response module at the plasma membrane that includes CYCLIC NUCLEOTIDE-GATED CHANNEL 17, H+-ATPase and BAK1. Plant Cell 27, 1718-1729. doi:10.1105/tpc.15.00306

Mair A, Pedrotti L, Wurzinger B, Anrather D, Simeunovic A, Weiste C, Valerio C, Dietrich K, Kirchler T, Nägele T, Vicente Carbajosa J, Hanson J, Baena-González E, Chaban C, Weckwerth W, Dröge-Laser W, Teige M (2015). SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants. eLife, doi:10.7554/eLife.05828.

Dautel R, Wu XN, Heunemann M, Schulze WX, Harter K (2015). The sensor histidine kinases AHK2 and AHK3 proceed into multiple serine/threonine/tyrosine phosphorylation pathways in Arabidopsis thaliana. Mol Plant, doi:10.1016/j.molp.2015.10.002.

2014
Mühe ME, Eisele JF; Daus B, Kappler A, Harter K, Chaban C (2014). Are rice (Oryza sativa L.) phosphate transporters regulated similarly by phosphate and arsenate? - a comprehensive study. Plant Mol Biol, doi: 10.1007/s11103-014-0186-9.

Peter S, Blum C, Zell, MB, Elgass K, Sackrow M, Maurino VG, Subramaniam V, Meixner A, Harter K, Schleifenbaum F (2014). Photosynthesis in a different light: Spectro-microscopy for in vivo characterisation of chloroplasts. Frontiers Plant Science 5, doi: 10.3389/ fpls.2014.00292.

Peter S, Harter K, Schleifenbaum F (2014). Fluorescence microscopy. Meth Mol Biol 1062, doi:10.1007/978-1-62703-580-4_23.

Slane D, Kong J, Berendzen KW, Kilian J, Henschen A, Schmid M, Harter K, Mayer U, De Smet I, Bayer M, Jürgens G (2014). Cell type-specific transcriptome analysis in the early Arabidopsis thaliana embryo. Development, doi:10.1242/dev.116459.

Soyk S, Simkova K, Zürcher E, Luginbühl L, Brand LH, Vaughan CK, Wanke D, Zeeman SC (2014). The Enzyme-like domain of Arabidopsis nuclear β-amylases is critical for DNA sequence recognition and transcriptional activation. Plant Cell, doi: 10.1105/ tpc.114.123703.

Veerabagu M, Kirchler T, Haible K, Elgass K, Harter K, Mira-Rodado V, Chaban C (2014). The type-B response regulator ARR18 mediates osmotic stress responses through direct interaction with bZIP transcription factors. Mol Plant, doi:10.1093/mp/ssu074.

Wolf S, van der Does D, Ladwig F, Sticht C, Kolbeck A, Schürholz AK, Augustin S, Keinath N, Rausch T, Greiner S, Schumacher K, Harter K, Zipfel C, Höfte H (2014). A receptor-like protein mediates the response to pectin modification by activating brassinosteroid signaling. Proc Natl Acad Sci USA, doi: 10.1073/pnas.1322979111.

2013
Brand LH, Fischer NM, Harter K, Kohlbacher O, Wanke D (2013). Elucidating the evolutionary conserved DNA-binding specificity of WRKY transcription factors by molecular dynamics and in vitro binding assays. Nucl Acids Res, doi:10.1093/nar/gkt732.

Brand LH, Henneges C, Schüssler A, Kolukisaoglu HÜ, Koch G, Thurow K, Zell A, Harter K, Wanke D (2013). High-throughput screening for protein-DNA interactions by automatable DPI-ELISA. PLoS ONE 8, e75177.

Eichner J, Topf F, Dräger A, Wrzodek C, Wanke D, Zell A (2013). TFpredict and SABINE: Sequence-based prediction of structural and functional characteristics of transcription factors. PLoS One 8, e82238.

Gördes D, Koch G, Thurow K, Kolukisaoglu Ü (2013). Analyses of Arabidopsis ecotypes reveal metabolic diversity to convert D-amino acids. SpringerPlus 2, e559.

Hahn A, Kilian J, Mohrholz A, Ladwig F, Peschke F, Dautel R, Harter K, Berendzen KW, Wanke D (2013). The plant core environmental stress response genes are systemically coordinated during abiotic stresses. Int J Mol Sci 14, 7617-7641.

Van Esse W, Harter K, de Vries S (2013). Computational modeling of the BRI1-receptor system. Plant Mol Biol, doi: 10.1111/pce.12077.

2012
Bauer J, Reiss K, Veerabagu M, Heunemann M, Harter K*, Stehle T* (2012). Structure-function analysis of Arabidopsis thaliana histidine kinase AHK5 bound to its cognate phosphotransfer protein AHP1. Mol Plant 6, 959-570; doi:10.1093/mp/sss126

Berendzen KW, Böhmer M, Wallmeroth N, Peter S, Vesic M, Zhou Y, Tiesler FKE, Schleifenbaum F, Harter K (2012). Screening for in planta protein-protein interactions combining bimolecular fluorescence complementation with flow cytometry. Plant Methods 8, e25, doi:10.1186/1746-4811-8-25.

Brand LH, Kolukisaoglu HÜ, Wanke D (2012). Limits and prospects of methods for the analysis of DNA-protein interaction. eBook, Bentham Publishing, accepted.

Kilian J, Peschke F, Berendzen KW, Harter K, Wanke D (2012). Prerequisites, performance and profits of transcriptional profiling the abiotic stress response. Biochim Biophys Acta 1819, 166-175.

Ladwig F, Stahl M, Ludewig U, Hirner AA, Hammes UZ, Stadler R, Harter K, Koch W (2012). Siliques are red 1 (SIAR1) from Arabidopsis acts as a bidirectional amino acid transporter which is crucial for the amino acid homeostasis of siliques. Plant Phys 158, 1643-1655.

Mira-Rodado V, Veerabagu M, Witthöft J, Teply J, Harter K, Desikan R (2012). Identification of two-component system elements downstream of AHK5 in the stomatal closure response of Arabidopsis thaliana. Plant Signal Behav 7, 1467-1476.

Veerabagu M, Elgass K, Kirchler T, Huppenberger P, Harter K, Chaban C, Mira-Rodado V (2012). The Arabidopsis B-type response regulator 18 (ARR18) homomerizes and positively regulates cytokinin responses. Plant J 72, 721-731.

Wanke D, Brand LH, Fischer NM, Peschke F, Kilian J, Berendzen KW (2012). Implications of DNA-nanostructures by Hoogsteen-dinucleotides on transcription factor binding. Quantum Bio-Informatics 30, 351-362.

Weidler G, zur Oven-Krockhaus S, Heunemann M, Orth C, Schleifenbaum F, Hoecker U, Harter K, Batschauer A (2012). Degradation of Arabidopsis CRY2 is regulated by SPA proteins and phytochrome A. Plant Cell 24, 2610-2623.

Weiste C, Berendzen KW, Wanke D, Kilian J, Harter K*, Dröge-Laser W* (2012). Bioinformatic cis-element analyses performed in Arabidopsis and rice disclose bZIP- and Myb-related binding sites as potential AuxRE-coupling elements in auxin-mediated transcription. BMC Plant Biol 12, e125.

Wenke K, Wanke D, Kilian J, Berendzen K, Harter K, Piechulla B (2012). Volatile-associated molecular patterns of two growth-inhibiting rhizobacteria commonly enrol AtWRKY18 function. Plant J 70, 445-459.

2011
Dietrich K, Weltmeier F, Ehlert A, Stahl M, Harter K, Dröge-Laser W (2011). The Arabidopsis transcription factors bZIP1 and bZIP53 are reprogramming gene expression in amino acid metabolism in response to energy deprivation. Plant Cell 23, 381-395.

Wanke D, Hohenstatt ML, Dynowski M, Bloss U, Hecker A, Elgass K, Hummel S, Hahn A, Caesar K, Schleifenbaum F, Harter K, Berendzen KW (2011). Alanine zipper-like coiled-coil domains are necessary for homotypic dimerization of plant GAGA-factors in the nucleus and nucleolus. PLoS One 6, e16070.

Caesar K, Elgass K, Chen Z, Huppenberger P, Witthöft J, Schleifenbaum F, Blatt MR, Oecking C, Harter K (2011). A fast brassinolide-regulated response pathway in the plasma membrane of Arabidopsis thaliana. Plant J 66, 528-540.

Witthöft J, Caesar K, Elgass K, Huppenberger P, Kilian J, Schleifenbaum F, Oecking C, Harter K (2011). The activation of the Arabidopsis P-ATPase 1 by the brassinosteroid receptor BRI1 is independent of threonine 948 phosphorylation. Plant Signaling & Behavior 6, 1063-1066.

Caesar K, Thamm AMK, Witthöft J, Elgass K, Huppenberger P, Grefen C, Horak J, Harter K (2011). Evidence for the function of the Arabidopsis cytokinin receptor AHK3 from the endoplasmic reticulum. J Exp Bot 62, 5571-5580.

Harter K, Meixner AJ, Schleifenbaum F (2011). Spectro-microscopy of living plant cells. Mol Plant 5, 14-26.

Witthöft J, Harter K (2011). Latest news on Arabidopsis brassinosteroid perception and signaling. Front Plant Sci 2: 58, doi:10.3389/fpls.2011.00058.

Tanz S, Kilian J, Johnsson C, Apel K, Small I, Harter K, Wanke D, Pogson B, Albrecht V (2011). SCO2 is involved in the regulation of chlorophyll biosynthesis and the formation of thylakoids by interacting with the LHCB1 chlorophyll a/b binding proteins. Plant J 69, 743-754.

Lummer M, Humpert F, Steuwe C, Caesar K, Schüttpelz M, Sauer M, Staiger D (2011). Reversible photoswitchable DRONPA-s monitors nucleocytoplasmic transport of an RNA-binding protein in transgenic plants. Traffic 12, 693-702.

Feldmeier K, Kilian J, Harter K, Wanke D, Berendzen KW (2011). Quantile-quantile plots: an approach fort he inter-species comparison of promoter architecture in eukaryotes. Quantum Bio-Informatics 28, 373-386.

2010
Elgass K, Caesar K, Stierhof Y-D, Meixner AJ, Harter K (2010). The fluorescence lifetime of BRI1-GFP as probe for the non-invasive determination of the membrane potential in living cells. SPIE Proc 7568, 756838.

Kirchler T, Briesemeister S, Singer M, Schütze K, Kohlbacher O, Vicente-Carbajosa J, Teige M, Harter K, Chaban C (2010). The role of phosphorylatable serine residues in the DNA-binding domain of Arabidopsis bZIP transcription factors. Eur J Cell Biol 89, 175-183.

Mangelsen E, Wanke D, Kilian J, Sundberg E, Harter K, Jansson C (2010). Diurnal gene regulation in developing caryopses of barley (Hordeum vulgare): Impact of light, sugar and amino acid supply. Plant Phys 153, 14-33.

Mangelsen E, Kilian J, Harter K, Jansson C, Wanke D, Sundberg E (2010). Transcriptome analysis of high temperature stress in developing barley caryopses: Early stress responses and effects on storage compound biosynthesis. Mol Plant 4, 97-115.

Peter S, Elgass K, Sackrow M, Caesar K, Born AK, Maniura K, Harter K, Meixner AJ, Schleifenbaum F (2010). Fluorescence intensity decay shape analysis microscopy (FIDSAM) for quantitative and sensitive live-cell imaging. SPIE Proc 7568, 756812.

Schleifenbaum F, Elgass K, Sackrow M, Caesar K, Berendzen KW, Meixner AJ, Harter K (2010). Fluorescence intensity decay shape analysis microscopy (FIDSAM) for quantitative and sensitive live-cell imaging. Mol Plant 3, 555-562.

Wanke D, Hahn A, Kilian J, Harter K, Berendzen KW (2010). Regulatory networks: inferring functional relationships through co-expression. Quantum Bio-Informatics 26, 405-424.

Elgass K, Caesar K, Harter K, Meixner AJ, Schleifenbaum F (2010). Combining ocFLIM and FIDSAM reveals fast and dynamic physiological responses at subcellular resolution in living plant cells. J Microscopy 242, 124-131.

Elgass K, Caesar K, Wanke D, Meixner AJ, Harter K, Schleifenbaum F (2010). Application of FLIM-FIDSAM for the in vivo analysis of hormone competence of different cell types. Anal Bioanal Chem 398, 1919-1925.

2009
 

Schröder A, Wrzodek C, Dräger A, Wanke D, Berendzen K, Kronfeld M, Harter K, Zell A (2009). ModuleMaster: a novel algorithm to detect functional combinations of regulators for sets of expressed genes. Biosystems 99, 79-81.

Wanke D, Kilian J, Bloss U, Mangelsen E, Supper J, Harter K, Berendzen KW (2009). Integrating biological perspectives: A quantum leap for microarray expression analysis. Quantum Bioinformatics, in press.

Schleifenbaum F, Elgass K, Sackrow M, Caesar K, Berendzen KW, Meixner AJ, Harter K (2009). Fluorescence intensity decay shape analysis microscopy (FIDSAM) for quantitative and sensitive live-cell imaging. Mol Plant, doi:10.1093/mp/ssp110.

Romir J, Harter K, Stehle T (2009). Two component systems in Arabidopsis thaliana – a structural view. Eur J Cell Biol, doi:10.1016/j.ejcb.2009.11.007.

Wanke D, Berendzen KW, Kilian J, Harter K (2009). Insights into the Arabidopsis abiotic stress response from the AtGenExpress expression profile dataset. In: Plant Stress Biology (ed.: Hirt H), p. 199-225; WILEY-VCH Verlag, Weinheim Germany.

Elgass K, Caesar K, Schleifenbaum F, Stierhof Y-D, Meixner AJ, Harter K (2009). Novel application of fluorescence lifetime and fluorescence microscopy enables quantitative access to subcellular dynamics in plant cells. PLoS One 4, e5716.

Hahn A, Harter K (2009). MAP kinase cascades and ethylene – signalling, biosynthesis or both? Plant Phys. 149, 1207-1210.

Wanke, D., Harter, K. (2009). Analysis of plant regulatory DNA sequences by the yeast one-hybrid assay. Methods Mol. Biol. 479, 291-309.

Schütze, K., Harter, K., Chaban, C. (2009). Bimolecular fluorescence complementation (BiFC): A novel tool to study protein-protein interactions in living plant cells. Methods Mol. Biol. 479, 189-202.

Grefen, C., Obrdlik, P., Harter, K. (2009). The determination of protein-protein interactions by the mating-based split-ubiquitin system (mbSUS). Methods Mol. Biol. 479, 217-233.

Berendzen, K.W., Harter, K., Wanke, D. (2009). Analysis of plant regulatory DNA sequences by transient protoplast assays and computer aided sequence evaluation. Methods Mol. Biol. 479, 311-335.

Weltmeier, F., Rahman, F., Ehlert, A., Dietrich, K., Schütze, K., Wang, X., Chaban, C., Hanson, J., Teige, M., Vicente-Carbajosa, Harter, K., Smeekens, S., Dröge-Laser, W. (2009). The Arabidopsis C/S1 bZIP transcription factor net work: availability of heterodimerisation partners controls gene expression in response to nutrient supply, energy status and stress conditions. Plant Mol. Biol. 69, 107-119.

2008
 

Supper, J., aufm Kampe, C., Wanke, D., Berendzen, K.W., Harter, K., Bonneau, R., Zell, A. (2008). Modeling gene regulation and spatial organization of sequence based motifs. Proc. 8^th IEEE International Conference on BioInformatics and BioEngineering (BIBE), p. 1-7.

Horak, J., Grefen, C., Berendzen, K.W., Hahn, A., Stierhof, Y.-D., Stadelhofer, B., Stahl, M., Koncz, C., Harter, K. (2008). The Arabidopsis thaliana response regulator ARR22 is a putative AHP phospho-histidine phosphatase expressed in the chalaza of developing seeds. BMC Plant Biol. 8, e77.

Desikan R, Horak J, Chaban C, Mira-Rodado V, Witthöft J, Elgass K, Grefen C, Cheung MK, Meixner AJ, Hooley R, Neill SJ, Hancock JT, Harter K. (2008). The histidine kinase AHK5 integrates endogenous and environmental signals in Arabidopsis guard cells. PLoS One 3: e2491.

Horák J, Grefen C, Berendzen KW, Hahn A, Stierhof YD, Stadelhofer B, Stahl M, Koncz C, Harter K. (2008). BMC Plant Biol. 2008 Jul 15;8:77.

Scharein, B., Voet-van-Vormizeele, J., Harter, K., Groth, G. (2008). Ethylene signalling: Identification of a putative ETR1-AHP1 phosphorelay complex by fluorescence spectroscopy. Anal. Biochem. 377, 72-76.
 

Hahn, A., Zimmermann, R., Wanke, D., Harter, K., Edelmann H.G. (2008). The root cap determines ethylene-dependent growth and development in maize roots. Mol. Plant 1, 359-367.
 

Grefen, C., Städele, K., Růžička, K., Obrdlik, P., Harter, K., Horák, J. (2008). Subcellular localization and in vivo interaction of the Arabidopsis thaliana ethylene receptor family members. Mol. Plant 1, 308-320.
 

Elke Mangelsen, Joachim Kilian, Kenneth W. Berendzen, Üner H. Kolukisaoglu, Klaus Harter, Christer Jansson, Dierk Wanke. (2008). Phylogenetic and comparative gene expression analysis of barley (Hordeum vulgare) WRKY transcription factor family reveals putatively retained functions between monocots and dicots. BMC Genomics, 9,194
 

Schütze K, Harter K, Chaban C. (2008). Post-translational regulation of plant bZIP factors. Trends in Plant Science Apr 16. doi:10.1016/j.tplants.2008.03.002

2007
 

D. Wanke, J. Kilian, J. Supper, K. W. Berendzen, A. Zell, and K. Harter, pp.294 - 314 (March 2007). The Analysis of Gene Expression and Cis-Regulatory Elements in Large Microarray Expession Datasets. QP-PQ: Quantum Probability and White Noise Analysis - Vol. 21 "Qunatum Bio-Informatics: From Quantum Information to Bio-Informatics". World Scientific (2008; ISSN: 1793-5121).
 

Schütze, K., Harter, K., Chaban, C. (2007). Bimolecular fluorescence complementation (BiFC): A novel tool to study protein-protein interactions in living plant cells. Plant Signal Transduction Methods and Protocols, Series: Methods in Molecular Biology, Vol. 479 Chapter 12, Pfannschmidt, Thomas (Ed.),2008
 

Grefen, C., Obrdlik, P., Harter, K. (2007). The determination of protein-protein interactions by the mating-based split-ubiquitin system (mbSUS). Plant Signal Transduction Methods and Protocols, Series: Methods in Molecular Biology, Vol. 479 Chapter 14, Pfannschmidt, Thomas (Ed.),2008
 

Supper, J., Strauch, M., Wanke, D., Harter, K., Zell. A. (2007). EDISA: A novel approach to extract gene modules from 3D gene-condition-time expression data. BMC Bioinformatics 8, e334.
 

Wanke, D., Harter, K. (2007). Analysis of plant regulatory DNA sequences by the yeast one-hybrid assay. Plant Signal Transduction Methods and Protocols, Series: Methods in Molecular Biology, Vol. 479 Chapter 19, Pfannschmidt, Thomas (Ed.),2008.
 

Berendzen, K.W., Harter, K., Wanke, D. (2007). Analysis of plant regulatory DNA sequences by transient protoplast assays and computer aided sequence evaluation. Plant Signal Transduction Methods and Protocols, Series: Methods in Molecular Biology, Vol. 479 Chapter 20, Pfannschmidt, Thomas (Ed.),2008
 

Grefen, C., Lalonde, S., Obrdlik, P. (2007). Split-ubiquitin system for identifying protein-protein interactions in membrane and full-length proteins. Current Protocols in Neuroscience 5.27.1-5.27.40 (DOI: 10.1002/0471142301.ns0527s41).
 

Strauch, J., Supper, J., Spieth, C., Wanke, D., Kilian, J., Harter, K., Zell, A. (2007). A two-step clustering for 3-D gene expression data reveals the main features of the Arabidopsis stress response. J. Integrative Bioinformatics 4, 54-66.
 

Mira-Rodado, V., Sweere, U., Grefen, C., Fiene, G., Fejes, E., Nagy, F., Schäfer, E., Harter, K. (2007). Functional cross talk between two-component and phytochrome B signal transduction in Arabidopsis. J. Exp. Botany, JXB Advance Access (DOI:10.1093/jxb/erm087).
 

Kilian, J., Whitehead, D., Horak, J., Weinl, S., Batistic, O., D´Angelo, C., Bornberg-Bauer, E., Kudla, J.*, Harter, K.* (2007). The AtGenExpress global stress expression data set: Protocols, evaluation and exemplary data analysis of UV-B light, drought and cold stress responses. Plant J. 50, 347-363.

2006
 

D'Angelo C, Weinl S, Batistic O, Pandey GK, Cheong YH, Schültke S, Albrecht V, Ehlert B, Schulz B, Harter K, Luan S, Bock R, Kudla J. (2006) Alternative complex formation of the Ca-regulated protein kinase CIPK1 controls abscisic acid-dependent and independent stress responses in Arabidopsis. Plant J. 48(6):857-72.
 

Weltmeier, F., Ehlert, A., Mayer, C.S., Dietrich, K., Wang, X., Schütze, K., Alonso, R., Harter, K., Vincente-Carbajosa, J., Dröge-Laser, W. (2006). Combinatorial control of proline dehydrogenase transcription by specific heterodimerisation of bZIP transcription factors. EMBO J. 25, 3133-3143.
 

Kaminaka, H., Näke, C., Epple, P., Dittgen, J., Schütze, K., Chaban, C., Holt, B.F., Merkle, T., Schäfer, E., Harter, K.*, Dangl, J.L.* (2006). Pathogen-induced cell death control via antagonistic functions of a bZIP transcription factor and LSD1 in Arabidopsis thaliana. EMBO 25, 4400-4411.
 

Desikan, R., Last, K., Harrett-Williams, R., Tagliavia, C., Harter, K., Hooley, R., Hancock, J.T., Neill, S.J. (2006). Ethylene-induced hydrogen peroxide synthesis and stomatal closure in Arabidopsis: a new paradigm for ethylene signalling. Plant J. 47, 907-916.

2004
 

Hass, C., Weinl, S., Harter, K., Kudla, J. (2004). Functional genomics of protein phosphorylation in Arabidopsis thaliana. In: Leister D. (ed.) Plant Functional Genomics; The Haworth Press, Binghamton, NY, 621-647.
 

Walter, M., Chaban, C., Schütze, K., Batistic, O., Weckermann, K., Näke, N., Blazevic, D., Grefen, C., Schumacher, K., Oecking, C., Harter, K.*, Kudla, J.* (2004) Visualisation of protein-protein interactions in living plant cells using bimolecular fluorescence complementation. Plant J. 40, 428-438.
 

Hass, C., Lohrmann, J., Albrecht, V., Sweere, U., Hummel, F., Yoo, S.D., Hwang, I., Zhu, T., Schäfer, E., Kudla, J.*, Harter, K.* (2004) The response regulator 2 mediates ethylene signalling and hormone signal integration in Arabidopsis. EMBO J. 23, 3290-3302.
 

Grefen, C., Harter, K. (2004). Plant two-component systems: principles, functions, complexity and cross talk. Planta 219, 733-742.

2003
 

Albrecht, V., Weinl, S., Blazevic, D., D´Angelo, C., Batistic, O., Kolukisaoglu, Ü., Bock, R., Schulz, B., Harter, K., Kudla, J. (2003). The calcineurin sensor CBL1 integrates plant responses to abiotic stresses. Plant J. 36, 457-470.
 

Nagy, F., Kevei, E., Harter, K., Schäfer, E. (2003). Phytochrome signal transduction. In: Batschauer A. (ed.) Photoreceptors and Light Signaling. Comprehensive Series in Photosciences (D.-P. Häder and G. Jori, Series editors); Elsevier Sciences, Amsterdam.

2002
 

Lohrmann, J., Harter, K. (2002). Plant two-component systems and the role of response regulators. Plant Physiol. 128, 363-369.

2001
 

Schäfer, E., Kircher, S., Gil, P., Harter, K., Kim, L., Wellmer, F., Kozma-Bognar, L., Adam, E., Nagy, F. (2001). Signal transduction in photomorphogenesis: Intracellular partitioning of factors and photoreceptors. In: Signal Transduction in Plants: Current Advances (S.K. Sopary, R. Oelmüller, S.C. Maheshwari (editors.); Kluwer Academic Publishers, p. 19-24.
 

Sweere, U., Eichenberg, K., Lohrmann, J., Mira-Rodado, V., Bäurle, I., Kudla, J., Nagy, F., Schäfer, E., Harter, K. (2001). Interaction of the response regulator ARR4 with phytochrome B in modulating red light signaling. Science 294, 1108-1111.
 

Wellmer, F., Schäfer, E., Harter, K. (2001). The DNA-binding properties of the parsley bZIP transcription factor CPRF4a are regulated by light. J. Biol. Chem. 276, 6274-6279.
 

Rügner, A., Frohnmeyer, H., Näke, C., Wellmer, S., Kircher, S., Schäfer, E., Harter, K. (2001). Isolation and characterization of four novel parsley proteins that interact with the transcriptional regulators CPRF1 and CPRF2. Mol. Genet. Genomics 265, 964-976.
 

Lohrmann, J., Sweere, U., Zabaleta, E., Bäurle, I., Keitel, C., Kozma-Bognar, L., Brennicke, A., Schäfer, E., Kudla, J., Harter, K. (2001). The response regulator ARR2: a pollen-specific transcription factor involved in the expression of nuclear genes for components of mitochondrial complex I in Arabidopsis. Mol. Genet. Genomics 265, 2-13.
 

Albrecht, V., Ritz, O., Linder, S., Harter, K., Kudla, J. (2001). The NAF domain defines a novel protein-protein interaction module conserved in Ca2+-regulated kinases. EMBO J. 20, 1051-1063.

2000
 

Kiessling, J., Kruse, S., Rensing, S., Harter, K., Decker, E., Reski, R. (2000). Visualization of a cytoskeleton-like FtsZ network in chloroplasts. J. Cell Biol. 151, 945-950.
 

Wellmer, F., Kircher, S., Rügner, A., Frohnmeyer, H., Schäfer, E., Harter, K. (2000). Phosphorylation of the parsley bZIP transcription factor CPRF2 is regulated by light. J. Biol. Chem. 274, 29476-29482.

1999
 

Shi, J., Kim, K.-N., Ritz, O., Albrecht, V., Gupta, R., Harter, K., Luan, S., Kudla, J. (1999). Novel protein kinases associated with calcineurin B-like calcium sensors in Arabidopsis. Plant Cell 11, 2393-2405.
 

Lohrmann, J., Buchholz, G., Keitel, C., Sweere, U., Kircher, S., Bäurle, I., Kudla, J., Schäfer, E., Harter, K. (1999). Differential expression and nuclear localization of response regulator-like proteins from Arabidopsis. Plant biol. 1, 495-505.
 

Kudla, J., Xu, Q., Harter, K., Gruissem, W., Luan, S. (1999). Genes for calcineurin B-like proteins in Arabidopsis are differentially regulated by stress signals. Proc. Natl. Acad. Sci. USA 96, 4718-4723.
 

Kleiner, O., Kircher, S., Harter, K., Batschauer, A. (1999). Nuclear localization of the Arabidopsis blue light receptor cryptochrome 2. Plant J. 19, 289-296.
 

Kircher, S., Wellmer, F., Nick, P., Rügner, A., Schäfer, E., Harter, K. (1999). Nuclear import of the parsley bZIP transcription factor CPRF2 is regulated bx phytochrome photoreceptors. J. Cell Biol. 144, 201-211.
 

Kircher, S., Kozma-Bognar, L., Kim, L., Adam, E., Harter, K., Schäfer, E., Nagy, F. (1999). Light qualityx dependent nuclear import of the plant photoreceptors phytochrome A and B. Plant Cell 11, 1445-1456.

1997
 

Kim, J., Harter, K., Theologis, A. (1997). Protein-protein interactions among the Aux/IAA proteins. Proc. Natl. Acad. Sci. USA 94, 11786-11791.

1994
 

Merkle, T., Haizel, T., Matsumoto, T., Harter, K., Dallmann, G., Nagy, F. (1994). Phenotype of the fission yeast cell cycle regulatory mutant pim1-46 is suppressed by a tobacco cDNA encoding a small Ran-like GTP-binding protein. Plant J. 6, 555-565.
 

Harter, K., Kircher, S., Frohnmeyer, H., Krenz, M., Nagy, F., Schäfer, E. (1994). Light-regulated modification and nuclear translocation of cytoplasmic G-box binding factors (GBFs) in parsley (Petroselinum crispum L.). Plant Cell 6, 545-559.
 

Harter, K., Frohnmeyer, H., Kircher, S., Kunkel, T., Mühlbauer, S., Schäfer, E. (1994). Light induces rapid changes of the phosphorylation pattern in the cytosol of evacuolated parsley protoplasts. Proc. Natl. Acad. Sci. USA 91, 5038-5042.
 

Feldbrügge, M., Sprenger, M., Dinkelbach, M., Yazaki, K., Harter, K., Weisshaar, B. (1994). Functional analysis of a light-responsive plant bZIP transcriptional regulator. Plant Cell 6, 1607-1621.

1993
 

Harter, K., Talke-Messerer, C., Barz, W., Schäfer, E. (1993). Light- and sucrose-dependent gene expression in photomixotrophic cell suspension cultures and protoplasts of rape (Brassica napus L.). Plant J. 4, 507-516.

1992
 

Frohnmeyer, H., Ehmann, B., Kretsch, T., Rocholl, M., Harter, K., Nagatani, A., Furuya, M., Batschauer, A., Hahlbrock, K., Schäfer, E. (1992). Differential usage of photoreceptors during plant development for chalcone synthase expression. Plant J. 2, 899-906.

1991
 

Hofmann, E., Grimm, R., Harter, K., Speth, V., Schäfer, E. (1991). Partial purification of sequestered particles of phytochrome from oat (Avena sativa L.) seedlings. Planta 183, 265-273.
 

Batschauer, A., Ehmann, B., Furuya, M., Grimm, R., Hofmann, E., Harter, K., Kretsch, T., Nagatani, A., Ocker, B., Speth, V., Schäfer, E. (1991). Light and cell specific gene expression. In: Phytochrome Properties and Biological Action, pp. 181-190, Nato Series. B. Thomas and C.B. Johnson (eds.), Springer, Berlin.

1990
 

Schäfer, E., Bruns, B., Frohnmeyer, H., Hahlbrock, K., Harter, K., Merkle, T., Ohl, S. (1990). Phytochrome in plant cell cultures. In: Current Plant Science and Biotechnology in Agriculture. Progress in Plant Cellular and Molecular Biology, pp. 355-365, H.J.J. Nijkamp, L.H.W. Van Der Plas, J. Van Aartrijk (eds.) Kluwer Academic Publishers, Dordrecht.
 

*Shared last authorship