Theses in progress

Topic: Enabling interactive exploration of infections of bacteria on gene expression level
Supervisor: Kay Nieselt / Nadine Ziemert / Maik Wolfram-Schauerte
Author: Caroline Trust

Topic: Computational Investigations into Beta-Lactam and Aminoglycoside Synergy
Supervisors: Kay Nieselt / Ana Rita Brochado / Simon Hackl
Author: Dario Eltzner

Topic: Polygenic risk modelling using Machine Learning
Supervisors: Kay Nieselt / Prof. Rasmussen (Novo Nordisk)
Author: Lisa Mathes

Topic: Characterisation of the population of Magnaporthe oryzae
Supervisors: Kay Nieselt / Detlef Weigel / Thorsten Langner
Author: Paul Grablowitz

Topic: Learning of convolution to improve bulk transcriptome deconvolution
Supervisors: Kay Nieselt / Georg Martius / Maik Wolfram-Schauerte
Author: Laura Achauer

Topic: Robustness of PCA embeddings of genotype samples across various genotype encoding strategies
Supervisor: Kay Nieselt / Susanne Zabel
Author: Kevin Dworzak

Topic:  Creating a Nextflow pipeline to uncover and compare unknown gene functions in bacteriophage genomes
Supervisor: Kay Nieselt / Maik Wolfram-Schauerte
Author: Samuel Müller 

Topic:  PRESERVE - A generalized approach for the identification of protein homologs in prokaryotes
Supervisor: Kay Nieselt / Simon Hackl / Mathias Witte Paz
Author: Raffael Rack

Topic: Improving mapping rates of damaged DNA sequencing reads
Supervisor: Kay Nieselt / Meret Häusler
Author: Benedikt Flamm

Topic: Pioneering bacterial bulk transcriptome deconvolution
Supervisor: Kay Nieselt / Maik Wolfram-Schauerte
Author: Adrian Bernhardt

Topic: An automated pipeline for siderophore synthesis and uptake potential
Supervisor: Kay Nieselt / Mathias Witte Paz
Author: Lukas Lorentz