Computational Systems Biology

Lectures on Systems Biology in 2016

Winter Term 2016/2017

The courses listed on this page were offered in the winter term 2016/17. For detailed course information, please follow the links to the campus portal and the ILIAS platform.

Systems Biology: Simulation of Dynamic Network States (BIOINF4394)

Campus
ILIAS
Syllabus

Summer Term 2016

Summer School at the Swiss Institute for Bioinformatics (SIB)

Biochemical Pathways and Large-Scale Metabolic Networks

Topics
  • Introduction to online metabolic pathway databases
  • Exercises / hands-on with useful software for working with metabolic networks:
    • Escher for visualization and
    • reconstruction with KEGGtranslator
    • practical excercise: reconstruction using online resource lookup
  • Introduction to constraint-based modeling and tutorial on COBRApy
  • Reconstruction and simulation of networks
    • Practical exercise in metabolic engineering using COBRApy/COBRA Toolbox
    • and visualizaion of results and data with Escher

This full-day course will be held by Prof. Nathan E. Lewis, Ph.D., (University of California, San Diego) together with Dr. Andreas Dräger on 30 August 2016 at the SIB in Lausanne.

Further information

The courses listed below were offered in the summer term 2016. For detailed course information, please follow the links to the campus portal and the ILIAS platform.

Systems Biology: Simulation of Dynamic Network States (BIOINF4394)

Campus

A practical course for the lecture Software Engineering (INF2110)

Campus

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