News

26.10.2021

ILW Award 2020/21 goes to Nantia Leonidou for her master thesis

Nantia Leonidou was honored for her master’s thesis on tissue-specific reconstruction of…

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15.09.2021

Successful Ph.D. defense in computational neuroscience

Martina Feierabend successfully defendet her theses “Plasticity of the auditory modality”.

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30.07.2021

Co-organization of the 6th annual SysMod meeting of the ISMB/ECCB.

Tübingen‘s systems biology team contributes to shaping the international systems modeling gathering.

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05.07.2021

Using computer models to identify weak spots in a virus

Andreas Dräger supports science communication - here with a Podcast in the Apotheken Umschau

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18.05.2021

Automating the refinement of C. striatum

Famke Bäuerle implemented a template for reconstruction and used it for C. striatum as her research…

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03.03.2021

Protein sequence clustering with DIAMOND

In her bachelor thesis, Jasmin Katz extended and optimized the clustering algorithm of DIAMOND.

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26.02.2021

High school students model multidrug-resistant bacteria for the Youth Research Competition

Aleyna Murat and Burcu Karakum achieve the 3rd place with systems biology models.

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26.01.2021

Tissue-specific reconstruction of constraint-based metabolic models based on ReconX

In her master thesis, Nantia Leonidou implemented a tool for tissue-specific model reconstruction…

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21.10.2020

Genome-scale model of Corynebacterium glutamicum

In her master thesis, Martina Feierabend created an extended model of one of the most relevant…

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07.10.2020

Automating the Assignment of Systems Biology Onotology Terms

In her bachelor's thesis, Elisabeth Fritze suggests an automatic assignment of SBO terms for…

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15.09.2020

Visual exploratory web application for flux sampling results

In his master thesis, Constantin Holzapfel created a visual exploratory web application to visualize…

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09.09.2020

Alina Renz awarded for her master thesis about virulence factors of P. aeruginosa

The German Society for Medical Informatics, Biometry & Epidemiology awards Alina Renz

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01.07.2020

Diagramming Against COVID-19

We fight against SARS-CoV-2 in great teams and with support from yWorks.

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16.06.2020

Genome-scale Model of Staphylococcus epidermidis

Anastasiia Grekova developed the first model of the facultative pathogen in her bachelor thesis.

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02.06.2020

First draft model for Corynebacterium striatum KC-Na-01

As a result of her research project, Tanja Urz constructed a new computer model.

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02.06.2020

Visualization of clinical multiomics data—The web-based application VMOD is extended

In her bachelor thesis, Ebru Cobanoglu improves the web-based visualization software VMOD

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20.05.2020

Tabular editor for systems biology models

Marietta Hamberger developed a table editor for the SBTab format as an InSilico plugin.

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05.05.2020

Automatic linking from genome to the reactome

Manuel Dienert's approach for the automatic inference of gene-protein reaction rules

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04.05.2020

Google funds 2 students' projects

Two international students contribute to software projects of the systems biology research group.

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16.03.2020

First model draft of Dolosigranulum pigrum 83VPs KB5

During her research project, Lina Widerspick has constructed a new model.

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19.11.2019

Web-based visualization of clinical multi-omic data in networks

A new browser software puts clinical data into the context of biological networks.

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24.09.2019

Antibiotic resistance in Pseudomonas aeruginosa

In his bachelor thesis Eike Pertuch investigated relevant resistance mechanisms.

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10.09.2019

First model draft of Moraxella catarrhalis BBH18

As a result of her research project, Pia Rautenstrauch introduces a new model.

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10.09.2019

Updated model of the pathogen H. influenzae

Niklas Henle expanded a genome-scale model of Haemophilus influenzae toward the human nose…

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03.09.2019

Google announces results of the Summers of Code 2019

All three systems biology projects completed the Summer of Code.

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29.08.2019

Dynamically animated metabolic networks

SBMLsimulator 2.0 enables users to map time-series data sets to interactive networks.

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17.06.2019

Interactive visual simulator for systems biology models

Mykola Zakharchuk developed an interactive InSilico plugin in his bachelor thesis.

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06.05.2019

Google funds three students' projects

Three international students contribute to software projects of the systems biology research group…

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11.03.2019

4th Annual Meeting for Biological Systems Modeling

Abstracts can be submitted until April 11to SysMod at ISMB/ECCB.

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02.03.2019

First version of an InSilico app for SBML files

Robert Deibel created a table-based editor plugin for InSilco.

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26.02.2019

Google Summer of Code 2019

International students may now apply for exciting projects.

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19.12.2018

Gene deletion increases bacterial virulence

Genes of the central carbon metabolism influence the virulence of the hospital germ P. aeruginosa.

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30.10.2018

The first draft model of the syphilis pathogen

In her master thesis, Silvia Morini reconstructed the first genome-scale model for Treponema…

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27.09.2018

New cluster of excellence for fighting infectious diseases

The University of Tübingen was able to acquire 3 clusters of excellence—one with systems biology…

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24.09.2018

Visualization of Biochemical Processes - Temperature Dependence in Red Blood Cells

Animation explains temperature dependence of metabolism in human erythrocytes.

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20.09.2018

Visualization of biochemical processes—storage of blood platelets

An animation explains biochemical processes in blood through a novel visualization.

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23.08.2018

New plugin-based software framework

Congratulations to Roman Schulte for successfully defending his bachelor thesis.

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22.08.2018

Google Summer of Code 2018 (GSoC)

Shalin Shah of Duke University successfully worked on the SBSCL project this summer.

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02.07.2018

Newly appointed: Junior Professor Dr. Andreas Dräger

Junior Professor of Computational Systems Biology of Infection and Antimicrobial-Resistant Pathogens…

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26.06.2018

Modeling of metabolism and gene expression in SBML

First draft for a uniform standard for storing ME models in SBML developed.

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17.05.2018

Validation and simulation of qualitative models in Java™

A package for logical modeling has been added to the Java library JSBML.

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28.09.2017

Dynamic visualization of time-dependent data in the context of systems biology networks

In two bachelor theses, methods were developed for animating biological networks using time-lapse…

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31.08.2017

Modeling of the essential genes of microbial life

EU-Projekt leistet Beitrag, um lebensnotwendigen genetischen Kern von Zellen zu identifizieren.

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11.09.2016

YouTube Channel to Systems Biology

A new channel with topics related to systems biology has been set up on YouTube.

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12.08.2015

Tübingen Bioinformatics supports international study into microbe survival

Bioengineers identify key genes and functions for sustaining microbial life in University of…

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10.08.2015

Bioengineers identify essential genes of microbial life.

New study defines minimal genetic composition and functions of bacterial cells.

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