Actively supported tools
- CatReNet: Interactive analysis of autocatalytic reaction networks
- CrossClassify: Mapping between different taxonomic classifications
- DeepToA: Deep-learning prediction of theatre of activity
- Dendroscope: An interactive viewer for large phylogenetic trees
- DIAMOND: Fast and sensitive protein alignment (20,000x BLASTX)
- MAIRA: Real-time taxonomic and functional analysis of long reads on a laptop
- MALT: MEGAN alignment tool
- MEGAN6: Interactive exploration and analysis of large-scale microbiome sequencing data
- MuLan-Methyl - Multiple transformer-based language models for accurate DNA methylation prediction
- PhyloSketch: Interactive construction of rooted phylogenetic trees and networks
- PLaBAse: Web resource of plant-associated bacteria and annotation services of their plant interaction factors and plant growth-promoting traits
- SplitsTree4: Phylogenetic trees and networks
- Tegula: Periodic tilings of the sphere, plane and hyperbolic plane
Coming soon
- SplitsTreeCE: New Communty Edition of SplitsTree - under development
Unsupported tools
- CrossLink: Sequence relationships between (micro) RNAs
- Darwin Rocks! Evolution of music
- Ella: Fast alignment of DNA reads on a laptop or desktop
- LOCAS: Low-coverage short-read assembler
- MEGAN5: Metagenome analysis. Old version of MEGAN software
- MEGAN4: Old version of MEGAN software
- Metasim: Sequencing simulator for genomes and metagenomes
- microHARVESTER: microRNA predictor
- NRPSpredictor: Specificity Prediction of Adenylation domains in NRPS
- OSLay: Optimal Syntenic layout of unfinished assemblies
- PAT: Protein alignment tool
- PAUDA: Poor man's BLASTX
- ReadSim: Sequencing simulator
- 2dTiler: Periodic tilings of the plane, sphere and hyperbolic plane
