Algorithms in Bioinformatics

Welcome to the Algorithms in Bioinformatics lab.

The main focus of our lab is on developing new and advanced algorithms for bioinformatics. Here is a short list of our current main research interests:

  • Microbiome analysis and simulation
  • Long read analysis
  • Phylogenetic networks and trees
  • Models, algorithms, software and complexity

For more details, see the research section, our publications and our software.

Recent Publications

Caner Bağcı, Sascha Patz, Daniel H. Huson (2021) DIAMOND+MEGAN: Fast and Easy Taxonomic and Functional Analysis of Short and Long Microbiome Sequences CURRENT PROTOCOLS Volume1, Issue 3

Wenhuan Zeng, Anupam Gautam and Daniel H. Huson (2021) On the Application of Advanced Machine Learning Methods to Analyze Enhanced, Multimodal Data from Persons Infected with COVID-19, Computation 9(4)

Sofia Esquivel-Elizondo, Caner Bağcı, Monika Temovska, Byoung Seung Jeon, Irina Bessarab, Rohan BH Williams, Daniel H Huson, Largus T Angenent  (2021) The isolate Caproiciproducens sp. 7D4C2 produces n-caproate at mildly acidichttps://www.frontiersin.org/articles/10.3389/fmicb.2020.594524/full conditions from hexoses: genome and rBOX comparison with related strains and chain-elongating bacteria  Frontiers in Microbiology, Vol. 11, No. 594524

Latest News

Video of talk "A Galaxy of Periodic Tilings" (2021): YouTube

New preprint: Phylogenetic context using phylogenetic outlines