Algorithms in Bioinformatics


Publications from the Huson lab, sorted by year and author.


Arumugam, K, Bagci, C, Bessarab, I, Beier, S, Buchfink, B, Gorska, A, Qiu, G, Huson, DH, and Williams, RB (2019). Annotated bacterial chromosomes from frame-shift-corrected long read metagenomic data  Microbiome, 7(61).

Caner Bağcı, Sina Beier, Anna Górska, Daniel H Huson, Introduction to the Analysis of Environmental Sequences: Metagenomics with MEGAN, Evolutionary Genomics, Humana, New York, NY, 591-604 (2019)

Simone Herp, Sandrine Brugiroux, Debora Garzetti, Diana Ring, Lara M Jochum, Markus Beutler, Claudia Eberl, Saib Hussain, Steffi Walter, Roman G Gerlach, Hans J Ruscheweyh, Daniel Huson, Mikael E Sellin, Emma Slack, Buck Hanson, Alexander Loy, John F Baines, Philipp Rausch, Marijana Basic, Andre Bleich, David Berry, Bärbel Stecher, Mucispirillum schaedleri Antagonizes Salmonella Virulence to Protect Mice against Colitis, Cell host & microbe, 681-694. e8 (2019)

Poole, AC, Goodrich, JK, Youngblut, ND, Luque, GG, Ruaud, A, Sutter, JL, Waters, JL, Shi, Q, El-Hadidi, M, Johnson, LM, Bar, HY, Huson, DH, Booth, JG, and Ley, RE (2019). Human Salivary Amylase Gene Copy Number Impacts Oral and Gut Microbiomes. Cell Host & Microbe, 25(4):553 - 564.e7.

E Tacconelli, A Górska, G De Angelis, C Lammens, G Restuccia, J Schrenzel, DH Huson, B Carević, L Preoţescu, Y Carmeli, M Kazma, T Spanu, E Carrara, S Malhotra-Kumar, BP Gladstone. Estimating the association between antibiotic exposure and colonization with extended-spectrum β-lactamase-producing Gram-negative bacteria using machine learning methods: a multicentre, prospective cohort study, Clinical Microbiology and Infection, in press (2019)



Górska, A, Peter, S, Willmann, M, Autenrieth, I, Schlaberg, R, and Huson, D (2018). 
Dynamics of the human gut phageome during antibiotic treatment 
Computational Biology and Chemistry.

Huson, D, Albrecht, B, Bagci, C, Bessarab, I, Gorska, A, Jolic, D, and Williams, RB (2018). 
MEGAN-LR: New algorithms allow accurate binning and easy interactive exploration of metagenomic long reads and contigs 
Biology Direct, 13(6).

Lange, A, Beier, S, Huson, DH, Parusel, R, Iglauer, F, and Frick, J (2018). 
Genome Sequence of Galleria mellonella (Greater Wax Moth). 
Genome Announc, 6(2).

Vågene, AJ, Herbig, A, Campana, MG, Robles Garcia, NM, Warinner, C, Sabin, S, Spyrou, MA, Andrades Valtueña, A, Huson, D, Tuross, N, Bos, KI, and Krause, J (2018). 
Salmonella enterica genomes from victims of a major sixteenth-century epidemic in Mexico 
Nature Ecology & Evolution, 2(3):520–528.