Algorithms in Bioinformatics

BIOINF3310  Phylogeny and Evolution

Online

Lecturers Prof. Daniel Huson and Caner Bagci
Lectures

Lectures will be pre-recorded and made available Tuesdays at 8am via Ilias.

The lecturer is available for questions and discussions on Wednesdays at 11:30 (Zoom)

Assignments

Assignments will be made available every Tuesday at 8am via Ilias. Solutions are due by the following Tuesday  at 8am. 

Tutorials

Weekly tutorials will take place Tuesdays 8:15-9:45 via Zoom, starting 10-Nov. Participation is mandatory.

The time and date of tutorials will be discussed in the first session and may be subject to change.

Exam Written exam, in person, time and place to be announced
Audience Bachelor and master students, bioinformatics, 6 LP
Language English
Links Alma Ilias

Contents

This course gives an introduction to the basic concepts and methods of phylogenetics. 

Weekly assignments are handed out in class.

Date Topic Assignments
3.11.20 1. Graphs and trees Assignment 1
10.11.20 2. Counting trees and distances between trees Assignment 2
17.11.20 3. Maximum parsimony methods Assignment 3
24.11.20 continued Assignment 4
1.12.20 continued Assignment 5
8.12.20 4. Simple models of evolution Assignment 6
15.12.20 5. Distance-based methods Assignment 7
23.12.20 continued Assignment 8
12.1.21  6. Maximum-likelihood estimation Assignment 9
19.1.21  continued Assignment 10
26.1.21 7. Bayesian methods Assignment 11
2.2.21 8. Comparison and consensus Assignment 12
9.2.21 9. Whole genome phylogeny Assignment 13
16.2.21 10. Phylogenetic networks Practice exam

23.2.21

 Exam in D4 A19, building D, floor 4, Morgenstelle, 8-10h  

There will be a makeup exam on March 31, 10-12h??? (date not yet confirmed).

Recommended textbooks

How to get credit for this course

  • Always participate in the weekly problem sessions and actively present your results. If you miss more than two tutorials, then you will not be allowed to take the exam.
  • Assignments are set weekly and are due the following week.
  • Obtain at least 50% of all points. If you obtain 70%, 80% or 90% of all possible assignment points, then you will receive bonus points toward your exam.
  • Pass the exam.