Grundlagen der Bioinformatik
Lecturers | Prof. Daniel Huson, Dr. Benjamin Albrecht, Sina Beier and Klara Reichard |
Lectures | Mondays 10:15-12h, Wednesdays 10:15-12h, Hörsaal 2, Sand 6/7 |
Tutorials | Tuesdays, 10-12h, Wednesdays, 8-10h, 12-14h |
Grading | Your grade will be based on an exam, which will be taken in two parts. |
Admission to exam | Weekly participation in the tutorials in mandatory and you must achieve at least 50% of all assignment points to be admitted to the exam. |
Language | Englisch |
Links | Campus, Ilias |
Content and script:
This course discusses some of the foundations of bioinformatics, focusing on how "how stuff works". A script will be handed out at the beginning of each lecture and also posted online in Ilias.
Schedule
Date | Topic | Assignments |
---|---|---|
16.4. | 1. General Introduction (inkl. Festlegung und Einteilung der Übungsgruppen) | 1 |
18.4. | 2. Pairwise Alignment | |
Friday 20.4. | Jump into Java - intro to Java | |
23.4. | continued | 2 |
25.4. | continued | |
Friday 27.4. | Jump into Java - part 2 | |
30.4.. | 3. BLAST | 3 |
2.5. | continued | |
7.5. | 4. Multiple Sequence Alignment | 4 |
9.5. | continued | |
14.5. | 5. HMMs | 5 |
16.5.. | continued | |
28.5. | 6. Phylogenetics | 6 |
30.5.. | continued | Practice exam |
4.6. | continued | |
6.6.
| Exam - part I (chapters 1-6) | |
11.6. | 7. Sequencing and Assembly | 7 |
13.6. | continued | |
18.6. | 8. Population Genetics | 8 |
20.6. | continued | |
25.6. | 9. Protein Secondary Structure | 9 |
27.6. | continued | |
2.7. | 10. Protein Tertiary Structure | 10 |
4.7. | continued | |
9.7.. | 11. Microbiome Analysis | 11 |
11.7.. | continued | |
16.7. | 12. Cancer Genomics | Practice exam |
18.7. | 13. RNA Secondary Structure | |
23.7. | No lecture, just discussions and questions | |
25.7. 9-11h N06, Hörsaalzentrum Morgenstelle | Exam - part 2 (chapters 7 - 13) |
Makeup exams: Exam part 1: Friday, 22.6. 8-10h, Hörsaal 1, Sand 6/7. Exam part 2: Friday, 28.9., 10-12h, Hörsaal 2, Sand 6/7.