Bachelor Theses

Here is a listing of possible topics for projects. Please come and see us if you want to learn more about the topics. Further suggestions are welcome.

2024

Accelerating taxonomic analysis by performing LCA calculations in SQL
Comparison of 16S databases for microbiome analysis
Extending Sankoff's algorithm to rooted networks
Mapping phylogenetic networks to trees - done
Implementation of frame-work for autocatalytic networks in Python - done
Phylogenetics tool kit - implement a webpage providing phylogenetic outlines and similar - Mathilda Rudd

2023

Visualization of haplotype data on maps - done
Implementation and applications of split-newick format in Python - done
Building a web server for remote visualization of metagenome sequencing data - done

2022

Exploring improvement possibilities for reference based metagenome binning using sequence specific properties - done
A machine learning approach for survival prediction using transcriptome profiling data from lung cancer patients - done
BioSurfDB and use in MEGAN for fruit waste microbiome analysis - done
Visual analysis of large phylogenetic profiles using unrooted densi-trees - done
Unrooted densitrees - done
Using the BioSurfantDB classification in microbiome analysis using MEGAN - done
A machine learning approach for survival prediction using transcriptome profiling data from lung cancer patients - done
- Webserver for remote visualization of metagenome sequencing data - done

2021

Simulation amplicon sequencing for applciations in disease analysis - done
LCA analysis of metagenomic sequences in Python - done
Simulation study on the impact of reagent contamination in metagenomic analysis - done
Inter-study comparison in metagenomics - done
Implementation and improvement of MEGAN's taxonomic binning algorithms, in Python - done
Implementation of a MDA simulator with applications to COVID, in Python - done

2020

Contamination filtering in microbiome analysis - done
Inter-study comparison in metagenomics - done

2019

Analysis of metagenomic long-read sequences from a biorector - done
Durchschnitt von Fraktalen mit Hyperebenen - done
Darstellung der Kanten von periodischen Kachelungen in allen Geometrien - done
Using Mash, Dashing and other k-mer approaches to compute phylogenetic networks on bacteria - done

2018

Analyse unterschiedlicher Zellpopulationen von und nach Therapie - done
Improved taxonomic profiles based on simulated binning - done
Completeness, contamination and annotation of long read metagenome datasets - done

2017

Analysis of antimicrobial resistance in microbiome sequencing data - done
Application of MetaCyc in microbiome analysis - done
Classification of phages and visualization - done
Comparison of different KEGG-based microbiome analysis approaches - done

2016

Development of a MobileApp/Website for advising proper antibiotics usage - done
Phage identification in metagenomics - done
Fast computation of consensus splits - done
Structural variants of Bacteroides vulgatus - done
Ecoli assembly - done
NanoChain: An Empirical Nanopore Read Simulator - done

2015

Design and implementation of a web portal for microbiome data - done
Analysis of microbiome data in the context of Adipositas - done
Analysis of publicly available 16S human gut microbiome data - done
Deploying bioinformatics tools in the cloud using Docker -done
Steered Molecular Dynamics of 2fdt structure - done
Influence of Processing on 16S Analysis Data - done

2014

Visualisierung taxonomischer Daten mit Voronoi Trees - done
Fast comparison of metagenomic samples - done
Functional analysis using BioCyce - done
Genes associated with diabetes in the microbiome -done

2013

Comparision of metagenomic DNA, done
Clouding computing in bioinformatics, done
Android app for phylogenetic trees - done
Hybrid approach to analysis of 16S rRNA data - done

2012

Transskriptomanalyse von Krebszellen, done

2011

Vergleich von existierenden Metagenomics Pipelines -done
Analysis of ancient DNA - done

2010

Plattform für Next-Gen Transkriptomanalyse- done