Publications

2022

Chavez Rodriguez L, González-Nicolás A, Ingalls B, Nowak W, Xiao S, Pagel H.(2022): Optimal design of experiments to improve the characterization of atrazine degradation pathways in soil. European Journal of Soil Science. 2022;73(1):e13211.
Gerke, H. H., - Vogel, H.-J., Weber, T. K. D., van der Meij, W. M., & Scholten, T. (2022). 3–4D soil model as challenge for future soil research: Quantitative soil modeling based on the solid phase. Journal of Plant Nutrition and Soil Science, 00, 1– 25. https://doi.org/10.1002/jpln.202200239.
Glöckler, D., Wabnitz, C., Elsner, M., and Bakkour, R. (2023): Avoiding Interferences in Advance: Cyclodextrin Polymers to Enhance Selectivity in Extraction of Organic Micropollutants for Carbon Isotope Analysis. Anal. Chem. 2023, 95, 20, 7839–7848. https://doi.org/10.1021/acs.analchem.2c05465
Glöckler, D., Harir, M., Schmitt-Kopplin, P., Elsner, M., Bakkour, R. (2023): Discriminative Behavior of Cyclodextrin Polymers against Dissolved Organic Matter: Role of Cavity Size and Sorbate Properties. Anal. Chem. 2023, doi.org/10.1021/acs.analchem.3c01881
González-Nicolás A, Bilgic D, Kröker I, Mayar A, Trevisan L, Steeb H, ... Nowak, W. (2022): Optimal exposure time in Gamma-Ray Attenuation experiments for monitoring time-dependent densities. Transport in Porous Media. 2022.
Hsueh H, Guthke A, Wöhling T, Nowak W. (2022): Diagnosis of model-structural errors with a sliding time-window Bayesian analysis. Water Resources Research. 2022;58:e2021WR030590.
Huang, Y.M., Jakus, N., Straub, D., Konstantinidis, K.T., Blackwell, N., Kappler, A., Kleindienst, S. (2022). ‘Candidatus Ferrigenium straubiae’ sp. nov., ‘Candidatus Ferrigenium bremense’ sp. nov., ‘Candidatus Ferrigenium altingense’ sp. nov., are autotrophic Fe(II)-oxidizing bacteria of the family Gallionellaceae. Syst Appl Microbiol, 45(3): 126306
Jimenez-Fernandez, O., Schwientek, M., Osenbrück, K., Glaser, C., Schmidt, C., Fleckenstein, J.H. (2022): Groundwater-surface water exchange as key control for instream and groundwater nitrate concentrations along a first-order agricultural stream. Hydrological Processes, 02 February 2022; doi.org/10.1002/hyp.14507.
Liu, B., Finkel, M., Grathwohl, P. (2022): First order approximation for coupled film and intraparticle pore diffusion to model sorption/desorption batch experiments. Journal of Hazardous Materials 429 (2022) 128314.
Meierdierks, J., Zarfl, C., Beckingham, B., and Grathwohl, P. (2022): Comprehensive Multi-compartment Sampling for Quantification of Long-Term Accumulation of PAHs in Soils. ACS Environmental AU. https://doi.org/10.1021/acsenvironau.2c00015
Mellage, A., M. Dorrich, and S.B. Haderlein(2022): Capturing In Situ Glyphosate (De)sorption Kinetics in Floodplain Aquifer Sediment Columns: Geophysical Measurements and Reactive Transport Modeling. Environmental Science & Technology, 2022.
Osenbrück, K., Blendinger, E., Leven, C., Rügner, H., Finkel, M., Schulz, H., Grathwohl, P. (2022) Nitrate reduction potential of a fractured Middle Triassic carbonate aquifer, Southwest Germany. Hydrogeol. J., https://doi.org/10.1007/s10040-021-02418-9.
Petrova, E., Kortunov, E., Mayer, K.U., Grathwohl, P., Finkel, M., (2022): Travel time-based modelling of nitrate reduction in a fractured limestone aquifer by pyrite and iron carbonates under pore size limitation. Journal of Contaminant Hydrology, 248, 103983, https://doi.org/10.1016/j.jconhyd.2022.103983
Schäfer Rodrigues Silva A, Weber TK, Gayler S, Guthke A, Höge M, Streck T, …, and W Nowak (2022): Diagnosing Similarities in Probabilistic Multi-Model Ensembles - an Application to Soil-Plant-Growth-Modeling, Modeling Earth Systems and Environment, doi: 10.1007/s40808-022-01427-1.
Sponagel C; Bendel, D; Angenendt, E; Weber, TKD; Gayler, S; Streck, T; and E Bahrs (2022) Integrated assessment of regional approaches for biodiversity offsetting in urban-rural areas - a future based case study from Germany using arable land as an example, Land Use Policy, LUP-D-21-01351.
Störiko, A., Pagel, H., Mellage, A., van Cappellen, P, Cirpka, O.A. (2022): Denitrification-driven transcrip-tion and enzyme production at the river-groundwater interface: Insights from reactive-transport modeling. Water Resour. Res. 58(8): e2021WR031584, doi: 10.1029/2021WR031584.
Schloegl, J., Wimmer, B., Cramaro, L., Wirsching, J., Poll, C., Pagel, H., Kandeler, E., Huhn, C., Griebler, C., Haderlein, S. B. (2022): Heavy rainfall following a summer drought stimulates soil redox dynamics and facilitates rapid and deep translocation of glyphosate in floodplain soils. Environmental Science: Processes & Impacts 24(5), 825-838. DOI: 10.1039/d1em00527h.
Wang, Z., Jimenez-Fernandez, O., Osenbrück, K., Schwientek, M., Schloter, M., Fleckenstein, J.H., Lueders, T. (2022): Streambed microbial communities in the transition zone between groundwater and a first-order stream as impacted by bidirectional water exchange. Water Research, Volume 217, 15 June 2022, 118334.
Wimmer, B., et al., Phosphate addition enhances alkaline extraction of glyphosate from highly sorptive soils and aquatic sediments. Pest Management Science, 2022. 78(6): p. 2550-2559.
Wirsching, J., Wimmer, B., Ditterich, F., Schlögl, J., Martin-Laurent, F., Huhn, C., Haderlein, S., Kandeler, E., Poll, C. (2022): 13C assimilation as well as functional gene abundance and expression elucidate the biodegradation of glyphosate in a field experiment. Environmental Pollution 306, 119382.
Wei, R., Escher, B.I., Glaser, C., König, M., Schlichting, R., Schmitt, M., Störiko, A., Viswanathan, M., Zarfl, C. (2022): Modeling the Dynamics of Mixture Toxicity and Effects of Organic Micropollutants in a Small River under Unsteady Flow Conditions. doi.org/10.1021/acs.est.2c02824
Viswanathan, M., Weber, T. K.D., Gayler, S., Mai, J., Streck, T. (2022). A bayesian sequential updating approach to predict phenology of silage maize. Biogeosciences, 19(8):2187– 2209.
Viswanathan, M., Scheidegger, A., Streck, T., Gayler, S., Weber, T. K. D.(2022). Bayesian multi-level calibration of a process-based maize phenology model. Ecological Modelling, in print.
Weber, TKD; Ingwersen, J; Poyda, A; … and Streck, T. (2022): Multi-site, multi-crop measurements in the soil–vegetation–atmosphere continuum: a comprehensive dataset from two climatically contrasting regions in southwestern Germany for the period 2009–2018, Earth Syst. Sci. Data, 14, 1153–1181, 2022, doi: 10.5194/essd-14-1153-2022.
Wirsching, J., Chavez Rodriguez, L., Ditterich, F., Pagel, H., He, R., Uksa, M., Zwiener, C., Kandeler, E., Poll, C. (2022): Temperature and soil moisture change microbial allocation of pesticide-derived carbon. Ecotoxicology and Environmental Safety.
Zare, H; Weber, TKD; Ingwersen, J; Gayler, S; Nowak, W; and Streck, T (2022): Combining remote sensing and modelling approach for a real-time prediction of crop yield in uncertain conditions, Remote Sens. 2022, 14, 1360., doi: 10.3390/rs14061360.

2021

Banerjee, I., Guthke, A., Van De Ven, C.J.C., Mumford, K.G., Nowak, W. (2021): Overcoming the model-data-fit problem in porous media: A quantitative method to compare invasion-percolation models to high-resolution data. Water Resources Research. https://doi.org/10.1029/2021WR029986.
Chavez Rodriguez, L., Ingalls, B., Meierdierks, J., Kundu, K., Streck, T., and Pagel, H. (2021). Modeling Bioavailability Limitations of Atrazine Degradation in Soils. Frontiers in Environmental Science 9, 361. doi:10.3389/fenvs.2021.706457.
Chavez Rodriguez, L., Ingalls, B., Schwarz, E., Streck, T., Uksa, M., and Pagel, H. (2021). Correction to “Gene-Centric Model Approaches for Accurate Prediction of Pesticide Biodegradation in Soils.” Environ. Sci. Technol. 55, 6524–6524.
Gonzalez-Nicolas, A., Schwientek, M., Sinsbeck, M., Nowak, W. (2021): Characterization of export regime in discharge-concentration plots via an advanced time-series model and event-based sampling strategies. Water 2021, 13, 1723. https://doi.org/10.3390/w13131723.
Huang, Y.M., Straub, D., Kappler, A., Smith, N., Blackwell, N., Kleindienst, S. (2021): A novel enrichment culture highlights core features of microbial networks contributing to autotrophic nitrate reduction coupled to Fe(II) oxidation. Microb Physiol 2021;31:280–295. https://doi.org/10.1159/000517083.
Huang, Y.M., Straub, D., Blackwell, N., Kappler, A., Kleindienst, S. (2021): Meta-omics reveal Gallionellaceae and Rhodanobacter as interdependent key players for Fe(II) oxidation and nitrate reduction in the autotrophic enrichment culture KS. Appl Environ Microbiol. 2021 Aug; 87(15): e00496-21. doi:10.1128/AEM.00496-21.
Jakus, N., Blackwell, N., Osenbrueck, K., Straub, D., Byrne, J.M., Wang, Z., Gloeckler, D., Elsner, M., Lueders, T., Grathwohl, P., Kleindienst, S., Kappler, A. (2021): Nitrate removal by a novel autotrophic nitrate-reducing iron(II)-oxidizing culture enriched from a pyrite-rich limestone aquifer. Appl Environ Microbiol 2021, 27;87(16):e0046021. doi: 10.1128/AEM.00460-21. Epub 2021 Jul 27.
Jakus, N., Mellage, A., Höschen, C., Maisch, M., Byrne, J.M., Mueller, C.W., Grathwohl, P., Kappler, A. (2021): Anaerobic Neutrophilic Pyrite Oxidation by a Chemolithoautotrophic Nitrate-Reducing Iron(II)-Oxidizing Culture Enriched from a Fractured Aquifer, Environmental Science and Technology, https://doi.org/10.1021/acs.est.1c02049.
Klingler, S., Martin, S., Cirpka, O.A., Dietrich, P., Leven, C. (2021): Kombination geophysikalischer und hydrogeologischer Methoden zur gezielten Erkundung feinkörniger Talfüllungen. Grundwasser volume 26, pages 379–394 (2021).
Muller, M.E., Zwiener, C., Escher, B.I. (2021): Storm Event-Driven Occurrence and Transport of Dissolved and Sorbed Organic Micropollutants and associated effects in the Ammer River, Southwestern Germany. Environ Toxicol Chem 40:88-99. DOI: 10.1002/etc.4910.
Niu, L.L., Ahlheim, J., Glaser, C., Gunold, R., Henneberger, L., Konig, M., Krauss, M., Schwientek, M., Zarfl, C., Escher, B.I. (2021): Suspended particulate matter – source or sink for chemical mixtures of organic micropollutants in a small river under baseflow conditions? Environ Sci Technol 55:5106-5116.
Schmitt, M., Wack, K., Glaser, C., Wei, R., Zwiener C. (2021): Separation of photochemical from non-photochemical diurnal in-stream attenuation of micropollutants. Environ Sci Technol; DOI: 10.1021/acs.est.1c02116.
Selzer, P., Allgeier, J., Terrien, R., Cirpka, O.A. (2021): Finite-Volume flux reconstruction and semi-analytical particle tracking on triangular prisms for Finite-Element-type models of variably-saturated flow. Advances Water Resour., doi: 10.1016/j.advwatres.2021.103944.
Spona-Friedl, M., Braun, A., Huber, C., Eisenreich, W., Griebler, C., Kappler, A., Elsner, M. (2020): Substrate-dependent CO2-fixation in heterotrophic bacteria revealed by stable isotope labelling. FEMS Microbiology Ecology 96, fiaa080.
Störiko, A., Pagel, H., Mellage, A., Cirpka, O.A. (2021): Does it pay off to explicitly link functional gene ex-pression to denitrification rates in reaction models? Frontiers Microbiol. (in press), doi: 10.3389/fmicb.2021.684146.
Visser, A.N., Lehmann, M.F., Ruegner, H., D'Affonseca, F.M., Grathwohl, P., Blackwell, N., Kappler, A., Osenbrueck, K. (2021): Fate of nitrate during groundwater recharge in a fractured karst aquifer. Hydrogeology Journal 29, 1153-1171.https://doi.org/10.1007/s10040-021-02314-2.
Wallach, D; et al.; …; Streck, T., ..., Weber, TKD; … (2021): How well do crop modeling groups predict wheat phenology, given calibration data from the target population, European Journal of Agronomy, 124, 126195.
Weber, TKD, Ingwersen, J, Poyda, A, …, Streck, T (2021): 9 years of comprehensive multi-site, multi-climatic region, multi-crop in the soil-vegetation-atmosphere continuum in agroecosystems of South-Western Germany, Earth System Science Data, doi: 10.5194/essd-2020-396
Yang, J., Heidbüchel, I., Musolff, A., Xie, Y., Lu, C., Fleckenstein, J.H. (2021): Using nitrate as a tracer to constrain age selection preferences in catchments with strong seasonality. Journal of Hydrology, 603A, December 2021, 126889.

2020

Allgeier, J., González-Nicolás, A., Nowak, W., Cirpka, O.A. (2020): A stochastic framework to optimize monitoring strategies for delineating groundwater divides. Frontiers Earth Sci. 8: 554845: doi: : 10.3389/feart.2020.554845.
Abramov, S., Tejada, J., Grimm, L., Schaedler, F., Bulaev, A.G., Tomaszewski, E., Byrne, J., Straub, D., Thorwarth, H., Amils, R., Kleindienst, S., Kappler, A. (2020): Role of biogenic Fe(III) minerals as a sink and carrier of heavy metals in the Rio Tinto river, Spain. Sci Total Environ 718: 137294, doi: 10.1016/j.scitotenv.2020.137294.
Blackwell, N., Bryce, C., Straub, D., Kappler, A., Kleindienst, S. (2020): Genomics insights into two novel Zetaproteobacteria Fe(II)-oxidizing isolates reveal lifestyle adaption to coastal marine sediments. Appl. Environ Microbio., doi: 10.1128/AEM.01160-20.
Bugsel, B., Zwiener, C. (2020): LC-MS screeining of poly- and perfluoroalkyl substances in contaminated soil by Kendrick mass analysis. Anal. Bioanal. Chem. 412: 4797-4805, doi: 10.1007/s00216-019-02358-0.
Chavez Rodriguez, L., Ingalls, B., Schwarz, E., Streck, T., Uksa, M., and Pagel, H. (2020).Gene-Centric Model Approaches for Accurate Prediction of Pesticide Biodegradation in Soils. Environ. Sci. Technol. 54, 13638–13650. doi:10.1021/acs.est.0c03315.
D'Affonseca, F.M., Finkel, M., Cirpka, O.A. (2020): Combining implicit geological modeling, field surveys, and hyfrogeological modeling to describe groundwater flow in a karst aquifer. Hydrogeology Journal 28: 2779–2802, doi: 10.1007/s10040-020-02220-z.
D. Erdal, O.A. Cirpka (2020): Technical Note: Improved sampling of behavioral subsurface flow model parameters using active subspaces. Hydrol. Earth Sys. Sci., 24: 4567-4574, doi: 10.5194/hess-24-4567-2020.
Erdal, D., Xiao, S., Nowak, W., Cirpka, O.A. (2020): Sampling behavioral model parameters for ensemble-based sensitivity analysis using Gaussian Process Emulation and Active Subspaces. Stoch. Environ. Res. Risk Ass., 34:1813-1830, doi: 10.1007/s00477-020-01867-0.
Finkel, M., Baur, A., Weber, T.K.D., Osenbrück, K., Rügner, H., Leven, C., Schwientek, M., Schlögl, J., Hahn, U., Streck, T., Cirpka, O.A., Walter, T., Grathwohl, P. (2020): Managing collaborative research data for integrated, interdisciplinary environmental research. Earth Sci Inform: 1-14, doi: 10.1007/s12145-020-00441-0.
Glaser, C., Zarfl. C., Werneburg, M., Böckmann, M., Zwiener, C., Schwientek, M. (2020): Temporal and spatial variable in-stream attenuation of selected pharmaceuticals. Sci. Total Environ. 741: 139514, doi: 10.1016/j.scitotenv.2020.139514.
Glaser, C., Zarfl, C., Rügner, H., Lewis, A., Schwientek, M. (2020): Analysing particle-associated pollutant transport to identify in-stream sediment processes during a high flow event. Water 12(6): 1794, doi: 10.3390/w12061794.
Glaser, C., Schwientek, M., Junginger, T., Gilfedder, B.S., Frei, S., Werneburg, M., Zwiener, C., Zarfl, C. (2020): Comparison of environmental tracers including organic micropollutants as groundwater exfiltration indicators into a small river of a karstic catchment. Hydrological Processes 34(24), 4712-4726. doi.org/10.1002/hyp.13909.
Glodowska, M., Stopelli, E., Schneider, M., Lightfoot, A., Rathi, B., Straub, D., Patzner, M., Berg, M., Vu, D., Kleindienst, S., Kappler, A. (2020): Role of in-situ natural organic matter in mobilizing As during microbial reduction of Fe(III)-mineral-bearing aquifer sediments from Hanoi (Vietman) Environ Sci Technol. 54,7: 4149-4159, doi: 10.1021/acs.est.9b07183.
Groh, J, Diamantopoulos, E., Duan, X, … Weber, TKD, …, and HH Gerke (2020) Crop growth and soil water fluxes at erosion-affected arable sites: Using weighing lysimeter data for model inter-comparison, Vadose Zone J. 19:e20058, doi: 10.1002/vzj2.20058.
Heidgen, S., Marinova, E., Krauß, R., Nelle, O., Ebner, M., Märkle, T., Miranda, T., Bofinger, J., Klingler, S., Junginger, A. (2020): Palaeoenvironment and potential resources for early Holocene subsistence in the Ammer River Valley (Germany) based on palaeoecological and bioarchaeological evidence. Quaternary International, in press, doi: 10.1016/j.quaint.2020.05.038.
Höge, M., Guthke, A. Nowak, W. (2020): Bayesian model weighting: The many faces of model averaging. Water 12(2): 309, doi: 10.3390/w12020309.
Klingler, S., Leven, C., Cirpka, O.A., Dietrich, P. (2020): Anomaly effect-driven optimization of direct-current geoelectric mapping surveys in large areas. Journal of Applied Geophysics 176, doi: 10.1016/j.jappgeo.2020.104002.
Klingler, S., Cirpka, O.A., Werban, U., Leven, C., Dietrich, P. (2020): Direct-push color logging images spatial heterogeneity of organic carbon in floodplain sediments. J. Geophys. Res. Biogeosci. 125(12): e2020JG005887, doi: 10.1029/2020JG005887.
Li,S., Braun, J.C., Buchner, D., Haderlein, S.B. (2020): Denitrifier method for nitrite removal in electrochemical analysis of the electron accepting capacity of humic sustances. Anal. Chem. 92(1): 616-621, doi: 10.1021/acs.analchem.9b03683.
Li, S., Kappler, A., Zhu, Y., Haderlein, S.B. (2020): Mediated electrochemical analysis as emerging tool to unravel links between microbial redox cycling of natural organic matter and anoxic nitrogen cycling. Earch Sc. Rev. (208), doi: 10.1016/j.earscirev.2020.103281.
Lihl, C., Heckel, B., Grzybkowska, A., Dybala-Defratyka, A., Ponsin, V., Torrentó, C., Hunkeler, D., Elsner, M. (2020): Compound-specific chlorine isotope fractionation in biodegradation of atrazine. Environ. Sci. Processes Impacts 22: 792-801, doi: doi: 10.1039/c9em00503j.
Liu, Y., Zarfl, C., Basu, N., Cirpka, O.A. (2020): Modeling the fate of pharmaceuticals in a fourth-order river under competing assumptions of transient storage. Water Resour. Res. 56(3): e2019WR026100, doi: 10.1029/2019WR026100.
Lutz, S.R., Trauth, N., Musolff, A., Van Breukelen, B.M., Knöller, K., Fleckenstein, J.H. (2020): How important is denitrification in riparian zones? Combining end-member mixing and isotope modeling to quantify nitrate removal from riparian groundwater. Water Resources Research 56: e2019WR025528, doi: 10.1029/2019WR025528.
Maier, R., Gonzalez-Nicolas, A., Leven, C., Nowak, W., Cirpka, O.A. (2020): Joint optimization of measurement and modeling strategies with application to radial flow in statified aquifers. Water Resour. Res. 56(7): e2019WR026872, doi: 10.1029/2019WR026872.
Martin, P. R.; Buchner, D.; Jochmann, M. A.; Haderlein, S. B. (2020): Stable carbon isotope analysis of polyphosphonate complexing agents by anion chromatography coupled to isotope ratio mass spectrometry: method development and application. Anal. Bioanal. Chem. 412: 4827-4835, doi: 10.1007/s00216-019-02251-w.
Martin, S., Klingler, S., Dietrich, P., Leven, C., Cirpka, O.A. (2020): Structural controls on the hydrogeological functioning of a floodplain. Hydrogeology Journal 28: 2675–2696, doi: 10.1007/s10040-020-02225-8.
Melsbach, A., Torrentó, C., Ponsin, V., Bolotin, J., Lachat, L., Prasuhn, V., Hofstetter, T.B., Hunkeler, D., Elsner, M. (2020): Dual-Element Isotope Analysis of deshenylchloridazon to investigate its environmental fate in a systematic field study: A long-term lysimeter experiment. Environ. Sci. Technol., doi: 10.1021/acs.est.9b04606.
Müller, M.E., Werneburg, M., Glaser, C., Schwientek, M., Zarfl, C., Escher, B.I., Zwiener, C. (2020): Influence of emission sources and tributaries on the spatial and temporal patterns of micropollutant mixtures and associated effects in a small river. Environ. Toxicol. Chem. 39(7): 1382-1391, doi: 10.002/etc.4726.
Nowak, K.M., Miltner, A., Poll, C., Kandeler, E., Streck, T., Pagel, H. (2020): Plant litter enhances degradation of the herbicide MCPA and increases formation of biogenic non-extractable residues in soil. Environ Int 142105867, doi: 10.1016/j.envint.2020.105867.
Pagel, H., Kriesche, B., Uksa, M., Poll, C., Kandeler, E., Schmidt, V., Streck, T. (2020): Spatial control of carbon dynamics in soil by microbial decomposer communities. Front. Environ. Sci. 8, doi: 10.3389/fenvs.2020.00002.
Riedel, T., Weber, T.K.D. (2020): Review: The influence of global change on Europe's water cycle and groundwater recharge. Hydrogeology Journal, doi: 10.1007/s10040-020-02165-3
Sanchez-León, E., Leven, C., Erdal, D., Cirpka, O.A. (2020): Comparison of two Ensemble-Kalman based methods for estimating aquifer parameters from real 3-D hydraulic and tracer tomographic tests. Geosci. 10: 462, doi: 10.3390/geosciences10110462.
Sanchez-León, E., Erdal, D., Leven, C., Cirpka, O.A. (2020): Comparison of two Ensemble-Kalman based methods for estimationg aquifer parameters from virtual 2-D hydraulic and tracer tomographic test. Gesosci. 10(7): 276, doi: 10.3390/geosciences10070276.
Schäfer Rodrigues Silva, A., Guthke, A., Höge, M., Cirpka, O.A., Nowak,W. (2020): Strategies for simplifying reactive transport models - a Bayesian model comparison. Water Resour. Res., 56(11): e2020WR028100, doi: 10.1029/2020WR028100.
Selzer, P., Cirpka, O.A. (2020): Postprocessing of standard Finite-Element velocity fields for accurate particle tracking applied to groundwater flow. Computational Geosciences, 24(4), 1605-1624in press, doi: 10.1007/s10596-020-09969-y.
Streck, T., Weber, T.K.D. (2020): Analytical expressions for noncapillary soil water retention based on popular capillary retention models. Vadose Zone j:, 19: e20042, doi: 10.1002/vzj2.20042.
Subdiaga, E., Harir, M., Orsetti, S., Hertkorn, N., Schmitt-Kopplin, P., Haderlein S.B. (2020): Preferential sorption of tannins at aluminum oxide affects the electron exchange capacities of dissolved and sorbed humic acid fractions. Environ Sci Technol 54(3): 1837-1847, doi: 10.1021/acs.est.9b04733.
Szabó, B, Gyurkó, D, Weynants, M, Weber, TKD (2020). Web interface for European hydraulic pedotransfer functions (euptfv2) DOI: doi.org/10.34977/euptfv2.01, Institute for Soil Sciences and Agricultural Chemistry, Centre for Agricultural Research.
Utom, A.U., Werban, U., Leven, C., Müller, C., Knöller, K., Vogt, C., Dietrich, P. (2020): Groundwater nitrification and denitrification are not always strictly aerobic and anaerobic processes, respectively: an assessment of dual-nitrate isotopic and chemical evidence in a stratified alluvial aquifer. Biogeochemistry, doi: 10.1007/s10533-020-00637-y.
Visser, A.N., Wankel, S.D., Niklaus, P.A., Byrne, J.M., Kappler, A., Lehmann, M.F. (2020): Impact of reactive surfaces on the abiotic reaction between nitrite and ferrous iron and associated nitrogen and oxygen isotope dynamics. Biogeosciences 17, 4355-4374.
Weber, TKD, Diamantopoulos, E (2020). R package spsh: Estimation and Prediction of Parameters of Various Soil Hydraulic Property Models, version 1.1.0, https://CRAN.R-project.org/package=spsh.
Wimmer, B., Pattky, M., Gulu Zada, L., Meixner, M., Haderlein, S.B., Zimmermann, H.-P., Huhn, C. (2020): Capillary electrophoresis-mass spectrometry for the direct analysis of glyphosate: method development and application to beer beverages and environmental studies. Anal. Bioanal. Chem., 1-17, doi: 10.1007/s00216-020-02751-0.
Wirsching J, Pagel H, Ditterich F, Uksa M., Werneburg M., Zwiener C., Berner D., Kandeler E., Poll C. (2020): Biodegradation of pesticides at the limit: kinetics and microbial substrate use at low concentrations. Front Microbiol 11: 2107, doi: https://doi.org/10.3389/fmicb.2020.0210
Zhu, B., Wang, Z., Kanaparthi, D., Kublik, S., Ge, T., Casper, P., Schloter, M., Lueders, T. (2020): Long-read amplicon sequencing of nitric oxide dismutase (Nod) genes reveal diverse oxygencic denitrifiers in agricultural soils and lake sediments. Microbial Ecology doi: 10.1007/s00248-020-01482-0.
Zhu, B., Friedrich, B., Wang, Z., Táncsics, A., Lueders, T. (2020): Availability of nitrite and nitrate as electron acceptors modulates anaerobic toluene-degrading communities in aquifer sediments. Front. Microbiol. 11: 1867, doi: 10.3389/fmicb.2020.01867.

Related papers

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Bai, Y., Subdiaga, E., Haderlein, S.B., Knicker, H., Kappler, A. (2020): High pH and anoxic conditions during soil organic matter extraction increases its electron exchange capacity and ability to stimulate microbial Fe(III) reduction by electron shuttling. Biogeosciences 17, 683-698.
Bai, Y., Sun, T., Angenent, L.T., Haderlein, S.B., Kappler, A. (2020): Electron hopping enables rapid electron transfer between quinone-/hydroquinone-containing organic molecules in microbial iron(III) mineral reduction. Environmental Science and Technology 54, 10646-10653.
Glodowska, M., Stopelli, E., Schneider, M., Rathi, B., Straub, D., Lightfoot, A., Kipfer, R., Berg, M., AdvectAs team members, Jetten, M., Kleindienst, S., Kappler, A. (2020): Arsenic mobilization in groundwater driven by microbial iron-dependent anaerobic oxidation of methane. Nature Communications Earth & Environment 1, 42.
Groh, J; Diamantopoulos, E; Duan, X; …; Weber, TKD; …; and H Gerke (2020) Crop growth and soil water fluxes at erosion-affected arable sites: Using weighing lysimeter data for model inter-comparison, Vadose Zone Journal, doi: 10.1002/vzj2.20058.
Spahr, S., Teixido, M., Sedlak, D.L., Luthy, R.G. (2020): Hydrophilic trace organic contaminants in urban stormwater: occurrence, toxicological relevance, and the need to enhance green strormwater infrastructure. Environ. Sci. Water Res. Technol. 6: 15-44, doi: 10.1039/C9EW00674E
Weber, TKD, Finkel, M, da Conceição Gonçalves, M, Vereecken, H, Diamantopoulos, E (2020) Measured soil hydraulic and physical properties and estimated soil hydraulic property model parameters, http://hdl.handle.net/10900.1/c2f45822-86ba-4338-b3e0-2d068f024e07.
Weber, T.K.D., Finkel, M., da Conceicáo Goncalves, M., Vereecken, H., Diamantopoulos, E. (2020): Pedotransfer function for the Brunswick soil hydraulic property model and comparison to the von Genuchten-Mualem model. Water Resour. Res. doi: 10.1029/2019WR026820.

2019

Chow R, Hao W, Jeremy B, Jürnjakob D, Wöhling T, Nowak W. (2019): Sensitivity of simulated hyporheic exchange to river bathymetry: The Steinlach River Test Site. Groundwater. 2019;57(3):378–91.
Chow, R., Bennett, J., Dugge, J., Wöhling, T., Nowak, W. (2019): Evaluating subsurface parameterization to simulate hyporheic exchange: The Steinlach River Test Site. Groundwater 58(1): 93-109, doi: 10.1111/gwat.12884.
Erdal, D., Baroni, G., Sanchez-Léon, E., Cirpka, O.A. (2019): The value of simplified models for spin up of complex models with an application to subsurface hydrology. Computers and Geosciences 126: 62-72, doi: 10.1016/j.cageo.2019.01.014.
Erdal, D., Cirpka, O.A. (2019): Global sensitivity analysis and adaptive stochastic sampling of a subsurface-flow model using active subspaces. Hydrol. Earth Syst. Sci. 23: 3787-3805, https://www.hydrol-earth-syst-sci.net/23/3787/2019/.
Eshonkulov, R., Poyda, A., Ingwersen, J., Wizemann, H.-D., Weber, T.K.D., Kremer, P., Högy, P., Pulatov, A., Streck, T. (2019): Evaluating multi-year, multi-site data on the energy balance closure of eddy-covariance flux measurements at cropland sites in southwestern Germany. Biogeosciences 16: 521-540, doi: 10.5194/bg-16-521-2019.
Glaser, C., Schwientek, M., Zarfl, C. (2019): Designing field-based investigations of organic micropollutant fate in rivers. Environ. Sci. Pollut. Res. 28: 28633-28649, doi: 10.1007/s11356-019-06058-1.
Guillet, G., Knapp, J.L.A., Merel,S., Cirpka, O.A., Grathwohl, P., Zwiener, C., Schwientek, M. (2019): Fate of wastewater contaminants in rivers: Using conservative-tracer based transfer functions to assess reactive transport. Science of the Total Environment 656: 1250-1260, doi: 10.1016/j.scitotenv.2018.11.379.
Höge, M., Guthke, A., Nowak, W. (2019): The hydrologist's guide to Bayesian model selection, averaging and combination. J. Hydrol. 572: 96-107, doi: 10.1016/j.jhydrol.2019.01.072.
Knapp, J.L.A., Osenbrück, K., Brennwald, M.S., Cirpka, O.A. (2019): In-situ mass spectrometry improves the estimation of stream reaeration from gas-tracer tests. Sci. Total Environ. 655: 1062-1070, doi: 10.1016/j.scitotenv.2018.11.300.
Lesch, M., Thiele, B., Streck, T., Grathwohl, P. (2019): In situ Monitoring von frisch applizierten Pflanzenschutzmitteln. Mitt Umweltchem Ökotox 25,2: 35-38.
Liu, Y., Zarfl, C., Basu, N., Cirpka, O.A. (2019): Turnover and legacy of sediment-associated PAH in a baseflow-dominated river. Sci. Total Environ. 671: 754-764.
Loschko, M., Wöhling, T., Rudolph, D.L. Cirpka, O.A. (2019): An electron-balance based approach to predict the decreasing denitrification potential of an aquifer. Groundwater 57 (6): 925-939, doi:10.1111/gwat.12876.
Marozava, S., Meyer, A. H., Pérez-de-Mora, A. Gharasoo, M., Zhuo, L., Wang, Z., Cirpka, O.A., Meckenstock, R. U., Elsner, M. (2019): Mass transfer limitation during slow anaerobic biodegradation of 2-methylnaphthalene. Environ.Sci. Technol. 53: 9481-9490, doi: 10.1021/acs.est.9b01152.
Marschmann, G.L., Pagel, H., Kügler, P., Streck, T. (2019): Equifinality, sloppiness and emergent structures of mechanistic soil biogeochemical models.Environmental Modelling & Software. Vol. 122, doi: 10.1016/j.envsoft.2019.104518.
Motavita, D.F., Chow, R., Guthke, A., Nowak, W. (2019): The Comprehensive Differential Split-Sample Test: A stress-test for hydrological model robustness under climate variability. J. Hydrol. 573: 501-515, doi: 10.1016/j.jhydrol.2019.03.054.
Müller, M.E., Vikstrom, S., König, M.,Schlichting, R., Zarfl, C., Zwiener, C., Escher, B.I. (2019): Mitochondrial toxicity of selected micropollutants, their mixtures, and surface water samples measured by the oxygen consumption rate in cells. Environ. Tox. and Chem. 5: 1000-1011, https://setac.onlinelibrary.wiley.com/doi/epdf/10.1002/etc.4396.
Straub, D., Blackwell, N., Langarica Fuentes, A., Peltzer, A., Nahnsen, S., Kleindienst, S. (2019): Interpretations of microbial community studies are biased by the selected 16S rRNA gene amplicon sequencing pipeline. bioRxiv, doi: 10.1101/2019.12.17.880468.
Subdiaga, E., Orsetti, S., Haderlein, S.B. (2019): Effects of sorption on redox properties of natural orgaic matter. Environ. Sci. and Technol. 53(24): 14319-14328.
Utom, A.U., Werban, U., Leven, C., Müller. C., Dietrich, P. (2019): Adaptive observation-based subsurface conceptual site modeling framework combining interdisciplinary methodologies: a case study on advancing the understanding of a groundwater nitrate plume occurrence. Environm. Science and Pollution Research 26: 15754-15766, doi: 10.1007/s11356-019-05048-7.
Weber, T.K.D., Durner, W., Streck, T., Diamantopoulos, E. (2019): A modular framework for modeling unsaturated soil hydraulic properties over the full moisture range. Water Resources Research 55, doi: 10.1029/2018WR024584.

2018

Gauglitz, G., Wimmer, B., Melzer, T., Huhn, C. (2018): Glyphosate analysis using sensors and electromigration separation techniques as alternatives to gas or liquid chromatography. Anal. Bioanal Chem 410: 725-746, doi:10.1007/s00216-017-0679-x.
Grathwohl, P. und Rügner, H. (2018): Das Schadstoff-Forschungsprojekt CAMPOS. TÜBINGER BLÄTTER 2018.
Höge, M., Wöhling, T., Nowak, W. (2018): A primer for model selection: The decisive role of model complexity. Water Resources Research 54(3): 1688-1715, doi: 10.1002/2017WR021902.
Huhn, C. (2018): More and enhanced glyphosate analysis is needed. Anal. Bioanl. Chem 410: 3041-3045, doi:10.1007/s00216-018-1000-3.
Knapp, J.L.A., Cirpka, O.A. (2018): A critical assessment of relating resazurin-resorufin experiments to reach-scale metabolism in lowland streams. J. Geophys. Res. Biogeosci. 123(12): 3538-3555, doi: 10.1029/2018JG004797.
Liu, Y., Zarfl, C., Basu, N.B., Schwientek, M., Cirpka, O. A. (2018): Contributions of catchment and in-stream processes to suspended sediment transport in a dominantly groundwater-fed catchment. Hydrol. Earth Syst. Sci., 22: 3903-3921, doi:10.5194/hess-22-3903-2018.
Loschko, M., Wöhling, T., Rudolph, D.L., Cirpka, O.A. (2018): Accounting for the Decreasing Reaction Potential of heterogeneous aquifers in a Stochastic Framework of Aquifer-Scale Reactive Transport. Water Resour. Res. 54(1): 442-463, doi:10.1002/2017WR021645.
Müller, M.E., Escher, B.I., Schwientek, M., Werneburg, M., Zarfl, C., Zwiener, C. (2018): Combining in vitro reporter gene bioassays with chemical analysis to assess changes in the water quality along the Ammer River, Southwestern Germany. Environ. Sci. Eur. 30: 20, doi:10.1186/s12302-018-0148-y.
Pinheiro, M., Pagel, H., Poll, C., Ditterich, F., Garnier, P., Streck, T., Kandeler, E., Gonod, L. V. (2018): Water flow drives small scale biogeography of pesticides and bacterial pesticide degraders - A microcosm study using 2,4-D as a model compound. Soil Biol. and Biochem. 127: 137-147, doi:10.1016/j.soilbio.2018.09.024.
Schaedler, F., Kappler, A., Schmidt, C. (2018): A revised iron extraction protocol for environmental samples enriched in nitrate, nitrile and carbonate. Geomicrobio. J. 35: 23-30.
Visser, A.-N. (2018): Nitrogen and oxygen Isotope Fractionation Systematics: Implications for Denitrification Mechanismus in Laboratory Batch Cultures & a Groundwater Microbial Community. Dissertation, Tübingen.

2017

Schwientek, M., Rügner, H., Scherer U., Rode M., Grathwohl P. (2017): A parsimonious approach to estimate PAH concentrations in river sediments of anthropogenically impacted watersheds. Science of the Total Environm. 601-602: 636-645, doi:10.1016/j.scitotenv.2017.05.208.