| Lecturer | Prof. Daniel Huson |
| Date | 22. October 2021 |
| Times | Fridays, 8-10h, 19.11.2021 .- 14.1.2022 |
| Register | Will be discussed in the lecture "Sequence Bioinformatics" |
| Language | English |
| Links | Alma Ilias |
In the group project, four students work together on a topic that was presented in the lecture.
To take this course, you must also be taking the course "Sequence Bioinformatics".
You can also take this course next summer while taking the course "Structure Bioinformatics".
A number of topics will proposed. You will work on these topics for a number of weeks and will then present your results.
Your grade will be based on the presentation.
This course is mandatory for students enroled in MSc-Bioinformatics PO-2021 and these students will be given precedence.
Topics:
| Topic | Students | Supervisor |
| 1. Calculate new substitution matrices and compare with BLOSUM62 | | |
| 2. Explore the use of LP to improve edge weights produced by NJ | | |
| 3. Compute trees from distances using ILP | | |
| 4. Explore different uses of Sankoff's algorithm | | |
| 5. Implement frame-shift aware alignment algorithm | | |
| 6. Phylogenetic analysis of COVID-19 genomes | | |
| 7. Use ML image-classification to compare genomes | | |
| 8. Use Mash+NJ to compute phylogeny of genus of bacterial species and compare with NCBI | | |
| | | |
| | | |
