Dr. Andreas Dräger

Abgeschlossene Projekte der Arbeitsgruppe für Systembiologie finden Sie am unteren Ende folgender separaten Seite.

Durch die Europäische Union gefördertes Projekt (FP7)

• AMBiCon: Automated multi-level modeling of biological systems considering physico-chemical constraints (2013 - 2015, Förderkennzeichen 332020). Dieses Marie Curie International Outgoing Fellowship (IOF) wurde gemeinsam mit der Universität von Kalifornien zu San Diego (UCSD) am dortigen Institut für Bioingenieurwesen in der Systembiologie-Forschungsgruppe von Prof. Bernhard Ø. Palsson durchgeführt.

Von der Universität Tübingen gefördertes Projekt

• Inference of biochemical reaction systems considering physico-chemical constraints (2011 - 2012, Förderkennzeichen 18017002).

Studenten-Projekte für quelloffene Software

• Projekt im Rahmen des National Resource for Network Biology Summer of Code zur Entwicklung von CySBML als eine neue Cytoscape-App für SBML-Unterstützung.
• Google Summer of Code 2014: ein quelloffenes Projekt für internationale Studenten gefördert durch Google Inc. In unserem Teilprojekt wurde die Java™-Bibliothek JSBML erweitert und neue Funktionen wurden implementiert - Weitere Informationen
• Google Summer of Code 2010

Durch das Bundesministerium für Forschung und Bildung (BMBF) geförderte Projekte

• Die Virtuelle Leber: Ein Projekt mit dem Ziel ein umfassendes Modell der menschlichen Leber zu erstellen (2010 - 2015, Förderkennzeichen 0315756).
• Nationales Genomforchungsnetz (NGFN-Plus): medizinische Genomforschung mit Focus auf die Parkinsonsche Krankheit (2009 - 2013, Förderkennzeichen 01GS08134).
• Spher4Sys: ein auf Systembiologie basierter Ansatz für die präklinische Entwicklung von Leitstrukturen unter Benutzung eines in-vivo-ähnlichen Spheroid-Testsystems. Dieses Projekt trägt zum Netzwerk der medizinischen Systembiologie bei (MedSys, 2009 - 2012, Förderkennzeichen 0315384C).
• HepatoSys: Systembiologie der menschlichen Leber, insbesondere der Detoxifikationsprozesse in Verbindung mit Statinbehandlung (2006 - 2010, Förderkennzeichen 0313080).
• NGFN-II EP: Exploratives Projekt zur Rekonstruktion genregulatorischer Netzwerke im Nationalen Genomforschungsnetz (2005 - 2009, Förderkennzeichen 0313323).

Vom Land Baden-Württemberg geförderte Projekte

• Identifikation und Analyse metabolischer Netze aus experimentellen Daten (Identification and analysis of metabolic networks given experimental data, 2006 - 2008, Vertragsnummer 7532.22-26-18).
• Tübinger Bioinformatik-Grid: Entwicklung und Anwendung neuer Bioinformatikansätze und Algorithmen auf Hochleistungs- und mehrfachparallele Computer (2006 - 2008, Vertragsnummer 23-7532.24-4-18/1).

Bioengineering 123 (2 + 2 SWS, Winterquartal 2014)

• Übungen Künstliche Intelligenz (2 SWS, Wintersemester 2012)
• Proseminar: Artificial Life (2 SWS, Sommersemester 2012)
• Praktikum Software Engineering (2 SWS, Sommersemester 2012)
• Seminar: Systembiologie (2 SWS, Wintersemester 2011)
• Proseminar: Moderne evolutionäre Optimierungsverfahren (2 SWS, Wintersemester 2011)
• Übungen Evolutionäre Algorithmen (2 SWS, Sommersemester 2011)
• Praktikum Software Engineering (2 SWS, Sommersemester 2011)
• Seminar: Regulatorische und metabolische Netze in der Systembiologie (2 SWS, Sommersemester 2009)
• Proseminar: Einführung in die Systembiologie (2 SWS, Wintersemester 2008)
• Seminar: Regulatorische und metabolische Netze (2 SWS, Sommersemester 2008)
• Practical Course: Software Engineering (2 SWS, Sommersemester 2007)
• Seminar: Inference of Regulatory and Metabolic Networks in Systems Biology (2 SWS, Sommersemester 2007)
• Seminar: Inferenz regulatorischer und metabolischer Netze in der Systembiolgie (2 SWS, Wintersemester 2006)
• Proseminar: Mashine Learning (2 SWS, Sommersemester 2006)

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1. Computational Modeling of Biochemical Networks.
   Andreas Dräger. Doktorarbeit, Universität Tübingen, Tübingen, Januar 2011.
   [ Link ]
2. Automatische und vergleichende Analyse bakterieller Genome mit Schwerpunkt auf Ralstonia/Cupriavidus-Arten sowie verwandten Proteobakerien.
   Andreas Dräger. Diplomarbeit, Martin-Luther-Universität Halle-Wittenberg, von-Seckendorff-Platz 1, 06120 Halle (Saale), Dezember 2005.
   [ PDF ]
3. Suche häufiger Proteinfragmente unter Berücksichtigung von Mutationen und Lücken.
   Andreas Dräger. Projektarbeit, Martin-Luther-Universität Halle-Wittenberg, von-Seckendorff-Platz 1, 06120 Halle (Saale), August 2003.

1. Exploring the metabolic profile of A. baumannii for antimicrobial development using genome-scale modeling
   Nantia Leonidou, Yufan Xia, Lea Friedrich, Monika S. Schütz und Andreas Dräger
   PLOS Pathongens, 23. September 2024.
   [ Details | Vorabdruck | DOI | PDF | PubMed | BibTeX ]
2. Perspectives on computational modeling of biological systems and the significance of the SysMod community
   Bhanwar Lal Puniya, Meghna Verma, Chiara Damiani, Shaimaa Bakr und Andreas Dräger
   Bioinformatics Advances, 26. Juni 2024
   [ Details | DOI | PDF | PubMed | BibTeX ]
3. Genome-Scale Modeling of Rothia mucilaginosa Reveals Insights into Metabolic Capabilities and Therapeutic Strategies for Cystic Fibrosis 
   Nantia Leonidou, Lisa Ostyn, Tom Coenye, Aurélie Crabbé und Andreas Dräger
   Microbiology Spectrum, 23. April 2024
   [ Details | DOI | Vorabdruck | PDF | PubMed | BibTeX ]
4. Genome-scale metabolic models consistently predict in vitro characteristics of Corynebacterium striatum
   Famke Bäuerle, Gwendolyn O. Döbel, Laura Camus, Simon Heilbronner und Andreas Dräger
   Frontiers in Bioinformatics, Section Network Bioinformatics, 23. Oktober 2023.
   [ Details | DOI | Vorabdruck | PDF | PubMed | BibTeX ]
5. An integrated systems-biology approach reveals differences in formate metabolism in the genus Methanothermobacter
   Isabelle Casini, Tim McCubbin, Sofia Esquivel-Elizondo, Guillermo G. Luque, Daria Evseeva, Christian Fink, Sebastian Beblawy, Nicholas D. Youngblut, Ludmilla Aristilde, Daniel H. Huson, Andreas Dräger, Ruth E. Ley, Esteban Marcellin, Largus T. Angenent, Bastian Molitor
   iScience, 22. September 2023
   [ Details | Vorabdruck | PDF | PubMed | BibTeX ]
6. Can Genome Sequencing Coupled to Flux Balance Analyses Offer Precision Guidance for Industrial Strain Development? The Lessons from Carbon Trafficking in Corynebacterium glutamicum ATCC 21573
   Eldin Kurpejović, Daniel Wibberg, Gülsüm Merve Bastem, Arthur Burgardt, Tobias Busche, Fatma Ece Altınışık Kaya, Andreas Dräger, Volker F. Wendisch und Berna Sarıyar Akbulut
   OMICS: A Journal of Integrative Biology, 27:9, 14. September 2023.
   [ Details | DOI | PDF | PubMed | BibTeX ]
7. Advancements in Computational Modelling of Biological Systems: seventh annual SysMod meeting
   Bhanwar Lal Puniya und Andreas Dräger
   Bioinformatics, 14. September 2023.
   [ Details | DOI | PDF | PubMed | BibTeX ]
8. SBOannotator: a Python Tool for the Automated Assignment of Systems Biology Ontology Terms
   Nantia Leonidou, Elisabeth Fritze, Alina Renz und Andreas Dräger
   Bioinformatics 2023, 14. Juli 2023.
   [ Details | DOI | Vorabdruck | PDF | PubMed | BibTeX ]
9. New workflow predicts drug targets against SARS-CoV-2 via metabolic changes in infected cells
   Nantia Leonidou, Alina Renz, Reihaneh Mostolizadeh und Andreas Dräger
   PLOS Computational Biology, 19(3): e1010903. 23. März 2023
   [ Details | DOI | Vorabdruck | PDF | PubMed | BibTeX ]
10. Genome-scale model of Pseudomonas aeruginosa metabolism unveils virulence and drug potentiation
    Sanjeev Dahal, Alina Renz, Andreas Dräger und Laurence Yang
    Communications Biology, 6, 165, 10. Februar 2023.
    [ Details | DOI | Vorabdruck | PDF | PubMed | BibTeX ]
11. Hierarchical modelling of microbial communities
    Manuel Glöckler, Andreas Dräger und Reihaneh Mostolizadeh
    Bioinformatics, 17. Januar 2023.
    [ Details | DOI | PDF | PubMed | BibTeX ]
12. Computational modelling in health and disease. Highlights of the 6^th annual SysMod meeting
    Anna Niarakis, Juilee Thakar, Matteo Barberis, María Rodríguez Martínez, Tomáš Helikar, Marc Birtwistle, Claudine Chaouiya, Laurence Calzone und Andreas Dräger.
    Bioinformatics, 22. September 2022.
    [ Details | DOI | PDF | PubMed | BibTeX ]
13. Towards the human nasal microbiome: simulating D. pigrum and S. aureus
    Reihaneh Mostolizadeh, Manuel Glöckler und Andreas Dräger
    Frontiers in Cellular and Infection Microbiology 2022, 15. August 2022
    [ Details | DOI | PDF | PubMed | BibTeX ]
14. FluxomicsExplorer: Differential visual analysis of flux sampling based on metabolomics
    Constantin Holzapfel, Miriam Hoene, Xinjie Zhao, Chunxiu Hu, Cora Weigert, Andreas Nieß, Guowang Xu, Rainer Lehmann, Andreas Dräger und Michael Krone
    Computers & Graphics, 29. August 2022
    [ Details | DOI | PDF | PubMed | BibTeX ]
15. NCMW: A Python Package to Analyze Metabolic Interactions in the Nasal Microbiome
    Manuel Glöckler, Andreas Dräger und Reihaneh Mostolizadeh
    Frontiers in Bioinformatics, 25. Februar 2022.
    [ Details | DOI | PDF | PubMed | BibTeX ]
16. A Computational Model of Bacterial Population Dynamics in Gastrointestinal Yersinia enterocolitica Infections in Mice
    Janina K. Geißert, Erwin Bohn, Reihaneh Mostolizadeh, Andreas Dräger, Ingo B. Autenrieth, Sina Beier, Oliver Deusch, Alina Renz, Martin Eichner und Monika S. Schütz.
    Biology, 11(2), 297; 12. Februar 2022.
    [ Details | DOI | Vorabdruck | PDF | PubMed | BibTeX ]
17. The Systems Biology Simulation Core Library
    Hemil Panchiwala, Shalin Shah, Hannes Planatscher, Mykola Zakharchuk, Matthias König und Andreas Dräger
    Bioinformatics, Band 38, Heft 3, Seiten 864-865, 1. Februar 2022.
    [ Details | DOI | Vorabdruck | PDF | PubMed | BibTeX ]
18. High-Quality Genome-Scale Reconstruction of Corynebacterium glutamicum ATCC 13032
    Martina Feierabend, Alina Renz, Elisabeth Zelle, Katharina Nöh, Wolfgang Wiechert und Andreas Dräger
    Frontiers in Microbiology, 15. November 2021.
    [ Details | DOI | PDF | PubMed | BibTeX ]
19. COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms
    Marek Ostaszewski, Anna Niarakis, Alexander Mazein, Inna Kuperstein, Robert Phair, Aurelio Orta-Resendiz, Vidisha Singh, Sara Sadat Aghamiri, Marcio Luis Acencio, Enrico Glaab, Andreas Ruepp, Gisela Fobo, Corinna Montrone, Barbara Brauner, Goar Frishman, Luis Cristóbal Monraz Gómez, Julia Somers, Matti Hoch, Shailendra Kumar Gupta, Julia Scheel, Hanna Borlinghaus, Tobias Czauderna, Falk Schreiber, Arnau Montagud, Miguel Ponce de Leon, Akira Funahashi, Yusuke Hiki, Noriko Hiroi, Takahiro G. Yamada, Andreas Dräger, Alina Renz, Muhammad Naveez, Zsolt Bocskei, Francesco Messina, Daniela Börnigen, Liam Fergusson, Marta Conti, Marius Rameil, Vanessa Nakonecnij, Jakob Vanhoefer, Leonard Schmiester, Muying Wang, Emily E. Ackerman, Jason E. Shoemaker, Jeremy Zucker, Kristie L. Oxford, Jeremy Teuton, Ebru Kocakaya, Gökçe Yağmur Summak, Kristina Hanspers, Martina Kutmon, Susan Coort, Lars Eijssen, Friederike Ehrhart, Rex D. A. B., Denise Slenter, Marvin Martens, Robin Haw, Bijay Jassal, Lisa Matthews, Marija Orlic-Milacic, Andrea Senff-Ribeiro, Karen Rothfels, Veronica Shamovsky, Ralf Stephan, Cristoffer Sevilla, Thawfeek Mohamed Varusai, Jean-Marie Ravel, Rupsha Fraser, Vera Ortseifen, Silvia Marchesi, Piotr Gawron, Ewa Smula, Laurent Heirendt, Venkata Satagopam, Guanming Wu, Anders Riutta, Martin Golebiewski, Stuart Owen, Carole Goble, Xiaoming Hu, Rupert Overall, Dieter Maier, Angela Bauch, John A. Bachman, Benjamin M Gyori, Carlos Vega, Valentin Grouès, Miguel Vazquez, Pablo Porras, Luana Licata, Marta Iannuccelli, Francesca Sacco, Denes Turei, Augustin Luna, Ozgun Babur, Sylvain Soliman, Alberto Valdeolivas, Marina Esteban-Medina, Maria Peña-Chilet, Tomáš Helikar, Bhanwar Lal Puniya, Anastasia Nesterova, Anton Yuryev, Anita de Waard, Dezso Modos, Agatha Treveil, Marton Laszlo Olbei, Bertrand De Meulder, Aurélien Naldi, Aurélien Dugourd, Vincent Noël, Laurence Calzone, Chris Sander, Emek Demir, Tamas Korcsmaros, Tom C. Freeman, Franck Augé, Jacques S. Beckmann, Jan Hasenauer, Olaf Wolkenhauer, Egon Willighagen, Alexander R. Pico, Chris Evelo, Marc Gillespie, Lincoln D. Stein, Henning Hermjakob, Peter DʼEustachio, Julio Saez-Rodriguez, Joaquin Dopazo, Alfonso Valencia, Hiroaki Kitano, Emmanuel Barillot, Charles Auffray, Rudi Balling, Reinhard Schneider und die COVID-19-Gemeinschaft für die Erstellung von Krankheitskarten
    Molecular Systems Biology 17: e10387, 19. Oktober 2021.
    [ Details | DOI | Vorabdruck | PubMed | PDF | BibTeX ]
20. SBMLWebApp: Web-based Simulation, Steady-State Analysis, and Parameter Estimation of Systems Biology Models
    Takahiro G. Yamada, Kaito Ii, Matthias König, Martina Feierabend, Andreas Dräger und Akira Funahashi
    Processes, 9(10), 15. Oktober 2021.
    [ Details | DOI | Vorabdruck | PubMed | PDF | BibTeX ]
21. An updated genome-scale metabolic network reconstruction of Pseudomonas aeruginosa PA14 to characterize mucin-driven shifts in bacterial metabolism
    Dawson D. Payne, Alina Renz, Laura J. Dunphy, Taylor Lewis, Andreas Dräger und Jason A. Papin
    npj Systems Biology and Applications 7, 37, 8. Oktober 2021.
    [ Details | DOI | Vorabdruck | PubMed | PDF | BibTeX ]
22. Curating and Comparing 114 Strain-Specific Genome-Scale Metabolic Models of Staphylococcus aureus
    Alina Renz und Andreas Dräger
    npj Systems Biology and Applications 7, 30, 29. Juni 2021
    [ Details | DOI | Vorabdruck | PubMed | PDF | BibTeX ]
23. SysMod: the ISCB community for data-driven computational modelling and multi-scale analysis of biological systems
    Andreas Dräger Tomáš Helikar, Matteo Barberis, Marc Birtwistle, Laurence Calzone, Claudine Chaouiya, Jan Hasenauer, Jonathan R. Karr, Anna Niarakis, María Rodríguez Martínez, Julio Saez-Rodriguez und Juilee Thakar.
    Bioinformatics, btab229, 24. Juni 2021.
    [ Details | DOI | Vorabdruck | PubMed | PDF | BibTeX ]
24. Genome-Scale Metabolic Model of Infection with SARS-CoV-2 Mutants Confirms Guanylate Kinase as Robust Potential Antiviral Target
    Alina Renz, Lina Widerspick und Andreas Dräger
    Genes, 2021, 12, 796. 24. Mai 2021
    [ Details | DOI | Vorabdruck | PubMed | PDF | BibTeX ]
25. First Genome-Scale Metabolic Model of Dolosigranulum pigrum Confirms Multiple Auxotrophies
    Alina Renz, Lina Widerspick und Andreas Dräger
    Metabolites, 11(4), 232, 9. April 2021
    [ Details | DOI | PubMed | PDF | BibTeX ]
26. FBA reveals guanylate kinase as a potential target for antiviral therapies against SARS-CoV-2
    Alina Renz, Lina Widerspick und Andreas Dräger.
    Bioinformatics, Band 36, Ausgabe Supplement_2, Seiten i813-i821, 29. Dezember 2020.
    [ Details | DOI | Zenodo | PubMed | YouTube | PDF | BibTeX ]
27. Computational Model Informs Effective Control Interventions against Y. enterocolitica Co-Infection
    Reihaneh Mostolizadeh und Andreas Dräger.
    Biology, 9(12), Sonderausgabe Computational Biology, 30. November 2020.
    [ Details | DOI | Vorabdruck | PubMed | PDF | BibTeX ]
28. Longitudinal multi-omics analyses identify responses of megakaryocytes, erythroid cells and plasmablasts as hallmarks of severe COVID-19 trajectories
    Joana P. Bernardes, Neha Mishra, Florian Tran, Thomas Bahmer, Lena Best, Johanna I. Blase, Dora Bordoni, Jeanette Franzenburg, Ulf Geisen, Jonathan Josephs-Spaulding, Philipp Köhler, Axel Künstner, Elisa Rosati, Anna C. Aschenbrenner, Petra Bacher, Nathan Baran, Teide Boysen, Burkhard Brandt, Niklas Bruse, Jonathan Dörr, Andreas Dräger, Gunnar Elke, David Ellinghaus, Julia Fischer, Michael Forster, Andre Franke, Sören Franzenburg, Norbert Frey, Anette Friedrichs, Janina Fuß, Andreas Glück, Jacob Hamm, Finn Hinrichsen, Marc P. Höppner, Simon Imm, Ralf Juenker, Sina Kaiser, Ying H. Kan, Rainer Knoll, Christoph Lange, Georg Laue, Clemes Lier, Matthias Lindner, Georgios Marinos, Robert Markewitz, Jacob Nattermann, Rainer Noth, Peter Pickkers, Klaus F. Rabe, Alina Renz, Christoph Röcken, Jan Rupp, Annika Schaffarzyk, Alexander Scheffold, Jonas Schulte-Schrepping, Domagoj Schunck, Dirk Skowasch, Thomas Ulas, Klaus-Peter Wandinger, Michael Wittig, Johannes Zimmermann, Hauke Busch, Bimba F. Hoyer, Christoph Kaleta, Jan Heyckendorf, Matthijs Kox, Jan Rybniker, Stefan Schreiber, Joachim Schultze und Philip Rosenstiel
    Immunity, 26. November 2020.
    [ Details | DOI | MedRxiv | PubMed | PDF | BibTeX ]
29. Community standards to facilitate development and address challenges in metabolic modeling
    Maureen A. Carey, Andreas Dräger, Moritz E. Beber, Jason A. Papin und James T. Yurkovich.
    Molecular Systems Biology, 26. August 2020.
    [ Details | DOI | PubMed | BioRxiv | PDF | BibTeX ]
30. SBML Level 3: an extensible format for the exchange and reuse of biological models
    Sarah M. Keating, Dagmar Waltemath, Matthias König, Fengkai Zhang, Andreas Dräger, Claudine Chaouiya, Frank T. Bergmann, Andrew Finney, Colin Gillespie, Tomáš Helikar, Stefan Hoops, Rahuman Malik-Sheriff, Stuart Moodie, Ion Moraru, Chris J. Myers, Aurélien Naldi, Brett Olivier, Sven Sahle, James Schaff, Lucian P. Smith, Maciej Swat, Denis Thieffry, Leandro Watanabe, Darren Wilkinson, Michael L. Blinov, Kimberly Begley, James Faeder, Harold Gómez, Thomas M. Hamm, Yuichiro Inagaki, Wolfram Liebermeister, Allyson Lister, Daniel Lucio, Eric Mjolsness, Carole Proctor, Karthik Raman, Nicolas Rodriguez, Clifford Shaffer, Bruce Shapiro, Joerg Stelling, Neil Swainston, Naoki Tanimura, John Wagner, Martin Meier-Schellersheim, Herbert Sauro, Bernhard Ø. Palsson, Hamid Bolouri, Hiroaki Kitano, Akira Funahashi, Henning Hermjakob, John C. Doyle, Michael Hucka und die SBML-Level-3-Gemeinschaft: Richard R. Adams, Nicholas A. Allen, Bastian R. Angermann, Marco Antoniotti, Gary D. Bader, Jan Červený, Mélanie Courtot, Chris D. Cox, Piero Dalle Pezze, Emek Demir, William S. Denney, Harish Dharuri, Julien Dorier, Dirk Drasdo, Ali Ebrahim, Johannes Eichner, Johan Elf, Lukas Endler, Chris T. Evelo, Christoph Flamm, Ronan M. T. Fleming, Martina Fröhlich, Mihai Glont, Emanuel Gonçalves, Martin Golebiewski, Hovakim Grabski, Alex Gutteridge, Damon Hachmeister, Leonard A. Harris, Benjamin D. Heavner, Ron Henkel, William S. Hlavacek, Bin Hu, Daniel R. Hyduke, Hidde Jong, Nick Juty, Peter D. Karp, Jonathan R. Karr, Douglas B. Kell, Roland Keller, Ilya Kiselev, Steffen Klamt, Edda Klipp, Christian Knüpfer, Fedor Kolpakov, Falko Krause, Martina Kutmon, Camille Laibe, Conor Lawless, Lu Li, Leslie M. Loew, Rainer Machne, Yukiko Matsuoka, Pedro Mendes, Huaiyu Mi, Florian Mittag, Pedro T. Monteiro, Kedar Nath Natarajan, Poul M. F. Nielsen, Tramy Nguyen, Alida Palmisano, Jean‐Baptiste Pettit, Thomas Pfau, Robert D. Phair, Tomas Radivoyevitch, Johann M. Rohwer, Oliver A. Ruebenacker, Julio Saez‐Rodriguez, Martin Scharm, Henning Schmidt, Falk Schreiber, Michael Schubert, Roman Schulte, Stuart C. Sealfon, Kieran Smallbone, Sylvain Soliman, Melanie I. Stefan, Devin P. Sullivan, Koichi Takahashi, Bas Teusink, David Tolnay, Ibrahim Vazirabad, Axel Kamp, Ulrike Wittig, Clemens Wrzodek, Finja Wrzodek, Ioannis Xenarios, Anna Zhukova und Jeremy Zucker.
    Molecular Systems Biology, 26. August 2020
    [ Details | DOI | PubMed | PDF | BibTeX ]
31. Systems biology markup language (SBML) level 3 package: multistate, multicomponent and multicompartment species, version 1, release 2
    Fengkai Zhang, Lucian P. Smith, Michael L. Blinov, James Faeder, William S. Hlavacek, José-Juan Tapia, Sarah M. Keating, Nicolas Rodriguez, Andreas Dräger, Leonard A. Harris, Andrew Finney, Bin Hu, Michael Hucka und Martin Meier-Schellersheim
    Journal of Integrative Bioinformatics, 6. Juli 2020.
    [ Details | DOI | PubMed | PDF | BibTeX ]
32. Systems biology graphical notation markup language (SBGNML) version 0.3
    Frank T. Bergmann, Tobias Czauderna, Ugur Dorusoz, Adrien Rougny, Andreas Dräger, Vasundra Touré, Alexander Mazein, Michael L. Blinov und Augustin Luna.
    Journal of Integrative Bioinformatics, 22. Juni 2020.
    [ Details | DOI | Link | PubMed | PDF | BibTeX ]
33. COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms
    Marek Ostaszewski, Alexander Mazein, Marc E. Gillespie, Inna Kuperstein, Anna Niarakis, Henning Hermjakob, Alexander R. Pico, Egon L. Willighagen, Chris T. Evelo, Jan Hasenauer, Falk Schreiber, Andreas Dräger, Emek Demir, Olaf Wolkenhauer, Laura I. Furlong, Emmanuel Barillot, Joaquin Dopazo, Aurelio Orta-Resendiz, Francesco Messina, Alfonso Valencia, Akira Funahashi, Hiroaki Kitano, Charles Auffray, Rudi Balling und Reinhard Schneider.
    Scientific Data 7, 136. 5. Mai 2020.
    [ Details | DOI | PubMed | PDF | BibTeX ]
34. Visualizing metabolic network dynamics through time-series metabolomic data
    Lea F. Buchweitz, James T. Yurkovich, Christoph Blessing, Veronika Kohler, Fabian Schwarzkopf, Zachary A. King, Laurence Yang, Freyr Jóhannsson, Ólafur Sigurjónsson, Óttar Rolfsson, Julian Heinrich und Andreas Dräger.
    BMC Bioinformatics 21, 130. 3. April 2020.
    [ Details | DOI | PubMed | BioRxiv | PDF | BibTeX ]
35. MEMOTE for standardized genome-scale metabolic model testing
    Christian Lieven, Moritz E. Beber, Brett G. Olivier, Frank T. Bergmann, Meric Ataman, Parizad Babaei, Jennifer A. Bartell, Lars M. Blank, Siddharth Chauhan, Kevin Correia, Christian Diener, Andreas Dräger, Brigitta E. Ebert, Janaka N. Edirisinghe, José P. Faria, Adam M. Feist, Georgios Fengos, Ronan M. T. Fleming, Beatriz García-Jiménez, Vassily Hatzimanikatis, Wout van Helvoirt, Christopher S. Henry, Henning Hermjakob, Markus J. Herrgård, Ali Kaafarani, Hyun Uk Kim, Zachary A. King, Steffen Klamt, Edda Klipp, Jasper J. Koehorst, Matthias König, Meiyappan Lakshmanan, Dong-Yup Lee, Sang Yup Lee, Sunjae Lee, Nathan E. Lewis, Filipe Liu, Hongwu Ma, Daniel Machado, Radhakrishnan Mahadevan, Paulo Maia, Adil Mardinoglu, Gregory L. Medlock, Jonathan M. Monk, Jens Nielsen, Lars Keld Nielsen, Juan Nogales, Intawat Nookaew, Bernhard O. Palsson, Jason A. Papin, Kiran R. Patil, Nathan D. Price, Osbaldo Resendis-Antonio, Anne Richelle, Isabel Rocha, Benjamín J. Sánchez, Peter J. Schaap, Rahuman S. Malik Sheriff, Saeed Shoaie, Nikolaus Sonnenschein, Bas Teusink, Paulo Vilaça, Jon Olav Vik, Judith A. H. Wodke, Joana C. Xavier, Qianqian Yuan, Maksim Zakhartsev und Cheng Zhang.
    Nature Biotechnology, 2. März 2020.
    [ Details | DOI | BioRxiv | PDF | PubMed | BibTeX ]
36. BiGG Models 2020: multi-strain genome-scale models and expansion across the phylogenetic tree
    Charles J. Norsigian, Neha Pusarla, John Luke McConn, James T. Yurkovich, Andreas Dräger, Bernhard O. Palsson und Zachary A. King
    Nucleic Acids Research, gkz1054, 7. November 2019
    [ Details | DOI | PDF | PubMed | BibTeX ]
37. The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2
    Michael Hucka, Frank T. Bergmann, Claudine Chaouiya, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Matthias König, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Rahuman Sheriff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson und Fengkai Zhang.
    Journal of Integrative Bioinformatics, 20. Mai 2019.
    [ Details | DOI | Link | PubMed | BibTeX ]
38. Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0
    Adrien Rougny, Vasundra Touré, Stuart Moodie, Irina Balaur, Tobias Czauderna, Hanna Borlinghaus, Ugur Dogrusoz, Alexander Mazein, Andreas Dräger, Michael L. Blinov, Alice C. Villéger, Robin Haw, Emek Demir, Huaiyu Mi, Anatoly Sorokin, Falk Schreiber und Augustin Luna.
    Journal of Integrative Bioinformatics, 13. Juni 2019.
    [ Details | DOI | Link | PubMed | BibTeX ]
39. The 2017 Network Tools and Applications in Biology (NETTAB) Workshop: aims, topics, and outcomes
    Paolo Romano, Arnaud Céol, Andreas Dräger, Antonino Fiannaca, Rosalba Giugno, Massimo La Rosa, Luciano Milanesi, Ulrich Pfeffer, Riccardo Rizzo, Soo-Yong Shin, Junfeng Xia und Alfonso Urso
    BMC Bioinformatics, 18. April 2019.
    [ Details | DOI | PDF | PubMed | BibTeX ]
40. Harmonizing semantic annotations for computational models in biology
    Maxwell L Neal,  Matthias König, David Nickerson, Göksel Mısırlı, Reza Kalbasi, Andreas Dräger, Koray Atalag, Vijayalakshmi Chelliah, Michael Cooling, Daniel L Cook, Sharon Crook, Miguel de Alba, Samuel H Friedman, Alan Garny, John H Gennari,  Padraig Gleeson, Martin Golebiewski, Michael Hucka, Nick Juty, Chris Myers, Brett G Olivier, Herbert M Sauro, Martin Scharm, Jacky L Snoep, Vasundra Touré, Anil Wipat, Olaf Wolkenhauer und Dagmar Waltemath.
    Briefings in Bioinformatics, 21. November 2018.
    [ Details | DOI | PDF | BioRxiv | PubMed | BibTeX ]
41. Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655
    Ye Gao, James T. Yurkovich, Sang Woo Seo, Ilyas Kabimoldayev, Andreas Dräger, Ke Chen, Anand V. Sastry, Xin Fang, Nathan Mih, Laurence Yang, Johannes Eichner, Byung-Kwan Cho, Donghyuk Kim und Bernhard O Palsson.
    Nucleic Acids Research, 23. August 2018.
    [ DOI | Link | PDF | PubMed | BibTeX ]
42. The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core
    Michael Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath und Darren J. Wilkinson.
    Journal of Integrative Bioinformatics, 26. April 2018.
    [ DOI | Link | PDF | BibTeX ]
43. The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core
    Michael Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath und Darren J. Wilkinson.
    Journal of Integrative Bioinformatics, 9. Februar 2018.
    [ DOI | Link | PDF | BibTeX ]
44. Recon3D enables a three-dimensional view of gene variation in human metabolism
    Elizabeth Brunk, Swagatika Sahoo, Daniel C Zielinski, Ali Altunkaya, Andreas Dräger, Nathan Mih, Francesco Gatto, Avlant Nilsson, German Andres Preciat Gonzalez, Maike Kathrin Aurich, Andreas Prlić, Anand Sastry, Anna D Danielsdottir, Almut Heinken, Alberto Noronha, Peter W Rose, Stephen K Burley, Ronan M T Fleming, Jens Nielsen, Ines Thiele und Bernhard O Palsson.
    Nature Biotechnology, 19. Februar 2018.
    [ DOI | Link | PDF | BibTeX ]
45. A Padawan Programmer’s Guide to Developing Academic Software Libraries
    James T. Yurkowich, Benjamin J. Jurkowich, Andreas Dräger, Bernhard O. Palsson und Zachary A. King.
    Cell Systems, Oktober 2017.
    [ DOI | Link | PDF | BibTeX ]
46. Evaluation of rate law approximations in bottom-up kinetic models of metabolism
    Bin Du, Daniel Zielinski, Andreas Dräger, Justin Tan, Zhen Zhang, Kayla Ruggiero, Garry Arzumanyan und Bernhard O. Palsson.
    BMC Systems Biology, 10(1):1-15, Juni 2016.
    [ DOI | Link | PDF | BibTeX ]
47. Synthetic promoters capable of driving robust nuclear gene expression in the green alga Chlamydomonas reinhardtii
    Melissa A. Scranton, Joseph T. Ostrand, D. Ryan Georgianna, Shane M. Lofgren, Daphne Li, Rosalie C. Ellis, David N. Carruthers, Andreas Dräger, David L. Masica und Stephen P. Mayfield.
    Algal Research, 15:135-142, Februar 2016.
    [ DOI | Link | PDF | BibTeX ]
48. ZBIT Bioinformatics Toolbox: a Web-Platform for Systems Biology and Expression Data Analysis
    Michael Römer, Johannes Eichner, Andreas Dräger, Clemens Wrzodek, Finja Wrzodek und Andreas Zell.
    PLoS ONE, 11(2):e0149263, Februar 2016.
    [ DOI | Link | BibTeX ]
49. Coordinating role of RXRα in downregulating hepatic detoxification during inflammation revealed by fuzzy-logic modeling
    Roland Keller, Marcus Klein, Maria Thomas, Andreas Dräger, Ute Metzger, Markus F. Templin, Thomas O. Joos, Wolfgang E. Thasler, Andreas Zell und Ulrich M. Zanger.
    PLoS Computational Biology, 12(1):e1004431, Januar 2016.
    [ DOI | Link | BibTeX ]
50. BiGG Models: A platform for integrating, standardizing und sharing genome-scale models
    Zachary A. King, Justin S. Lu, Andreas Dräger, Philip C. Miller, Stephen Federowicz, Joshua A Lerman, Ali Ebrahim, Bernhard O. Palsson und Nathan E. Lewis.
    Nucleic Acids Research, Oktober 2015.
    [ DOI | Link | PDF | BibTeX ]
51. Do Genome-scale Models Need Exact Solvers or Clearer Standards?
    Ali Ebrahim, Eivind Almaas, Eugen Bauer, Aarash Bordbar, Anthony P. Burgard, Roger L. Chang, Andreas Dräger, Iman Famili, Adam M. Feist, Ronan M. T. Fleming, Stephen S. Fong, Vassily Hatzimanikatis, Markus J. Herrgard, Allen Holder, Michael Hucka, Daniel Hyduke, Neema Jamshidi, Sang Yup Lee, Nicolas Le Novère, Joshua A. Lerman, Nathan E. Lewis, Ding Ma, Radhakrishnan Mahadevan, Costas Maranas, Harish Nagarajan, Ali Navid, Jens Nielsen, Lars K. Nielsen, Juan Nogales, Alberto Noronha, Csaba Pal, Bernhard O. Palsson, Jason A. Papin, Kiran R. Patil, Nathan D. Price, Jennifer L. Reed, Michael Saunders, Ryan S. Senger, Nikolaus Sonnenschein, Yuekai Sun und Ines Thiele.
    Molecular Systems Biology, 11(10):831, Oktober 2015.
    [ DOI | Link | PDF | BibTeX ]
52. SBMLsqueezer 2: Context-sensitive creation of kinetic equations in biochemical networks
    Andreas Dräger, Daniel C. Zielinski, Roland Keller, Matthias Rall, Johannes Eichner, Bernhard O. Palsson und Andreas Zell.
    BMC Systems Biology, 9(1):1-17, September 2015.
    [ DOI | Link | PDF | BibTeX ]
53. Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions
    Michael Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath und Darren J. Wilkinson.
    Journal of Integrative Bioinformatics, 12(2):271, September 2015.
    [ DOI | Link | PDF | BibTeX ]
54. Systems biology definition of the core proteome of metabolism and expression is consistent with high-throughput data
    Laurence Yang, Justin Tan, Edward J. O'Brien, Jonathan Monk, Donghyuk Kim, Howard J. Li, Pep Charusantia, Ali Ebrahim, Colton J. Lloyd, James T. Yurkovich, Bin Du, Andreas Dräger, Alex Thomas, Yuekai Sun, Michael A. Saunders und Bernhard O. Palsson.
    Proceedings of the National Academy of Sciences, August 2015.
    [ DOI | Link | PDF | BibTeX ]
55. Escher: A web application for building, sharing, and embedding data-rich visualizations of biological pathways
    Zachary A. King, Andreas Dräger, Ali Ebrahim, Nikolaus Sonnenschein, Nathan E. Lewis und Bernhard O. Palsson.
    PLoS Computational Biology, 11(8):e1004321, August 2015.
    [ DOI | Link | BibTeX ]
56. JSBML 1.0: providing a smorgasbord of options to encode systems biology models
    Nicolas Rodriguez, Alex Thomas, Leandro Watanabe, Ibrahim Y. Vazirabad, Victor Kofia, Harold F. Gómez, Florian Mittag, Jakob Matthes, Jan D. Rudolph, Finja Wrzodek, Eugen Netz, Alexander Diamantikos, Johannes Eichner, Roland Keller, Clemens Wrzodek, Sebastian Fröhlich, Nathan E. Lewis, Chris J. Myers, Nicolas Le Novère, Bernhard Ø. Palsson, Michael Hucka und Andreas Dräger.
    Bioinformatics, Juni 2015.
    [ DOI | arXiv | Link | PDF | BibTeX ]
57. SBMLsimulator: a Java tool for model simulation and parameter estimation in systems biology
    Alexander Dörr, Roland Keller, Andreas Zell und Andreas Dräger.
    Computation, 2(4):246-257, Dezember 2014.
    [ DOI | Link | PDF | BibTeX ]
58. Improving collaboration by standardization efforts in systems biology
    Andreas Dräger und Bernhard Ø. Palsson.
    Frontiers in Bioengineering, 2(61), Dezember 2014.
    [ DOI | Link | PDF | BibTeX ]
59. SBML Qualitative Models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools
    Claudine Chaouiya, Duncan Bérenguier, Sarah M. Keating, Aurélien Naldi, Martijn P. van Iersel, Nicolas Rodriguez, Andreas Dräger, Finja Büchel, Thomas Cokelaer, Bryan Kowal, Benjamin Wicks, Emanuel Gonçalves, Julien Dorier, Michel Page, Pedro T. Monteiro, Axel von Kamp, Ioannis Xenarios, Hidde de Jong, Michael Hucka, Steffen Klamt, Dennis Thierffry, Nicolas Le Novère, Julio Saez-Rodriguez und Tomáš Helikar.
    BMC Systems Biology, 7(1):135, Dezember 2013.
    [ DOI | arXiv | Link | PDF | BibTeX ]
60. TFpredict and SABINE: Sequence-Based Prediction of Structural and Functional Characteristics of Transcription Factors
    Johannes Eichner, Florian Topf, Andreas Dräger, Clemens Wrzodek, Dierk Wanke und Andreas Zell.
    PLoS ONE, 8(12):e82238, Dezember 2013.
    [ DOI | Link | PDF | BibTeX ]
61. Path2Models: large-scale generation of computational models from biochemical pathway maps
    Finja Büchel, Nicolas Rodriguez, Neil Swainston, Clemens Wrzodek, Tobias Czauderna, Roland Keller, Florian Mittag, Michael Schubert, Mihai Glont, Martin Golebiewski, Martijn van Iersel, Sarah M. Keating, Matthias Rall, Michael Wybrow, Henning Hermjakob, Michael Hucka, Douglas B Kell, Wolfgang Müller, Pedro Mendes, Andreas Zell, Claudine Chaouiya, Julio Saez-Rodriguez, Falk Schreiber, Camille Laibe, Andreas Dräger und Nicolas Le Novère.
    BMC Systems Biology, 7(1):116, November 2013.
    [ DOI | Link | PDF | BibTeX ]
62. Parkinson’s disease: dopaminergic nerve cell model is consistent with experimental finding of increased extracellular transport of α-synuclein
    Finja Büchel, Sandra Saliger, Andreas Dräger, Stephanie Hoffmann, Clemens Wrzodek, Andreas Zell und Philipp J. Kahle.
    BMC Neuroscience, 14(136), November 2013.
    [ DOI | Link | PDF | BibTeX ]
63. The systems biology simulation core algorithm
    Roland Keller, Alexander Dörr, Akito Tabira, Akira Funahashi, Michael J. Ziller, Richard Adams, Nicolas Rodriguez, Nicolas Le Novère, Noriko Hiroi, Hannes Planatscher, Andreas Zell und Andreas Dräger.
    BMC Systems Biology, 7:55, Juli 2013.
    [ DOI | Link | PDF | BibTeX ]
64. GRN2SBML: Automated encoding and annotation of inferred gene regulatory networks complying with SBML
    Sebastian Vlaic, Bianca Hoffmann, Peter Kupfer, Michael Weber und Andreas Dräger.
    Bioinformatics, 29:2216-2217, Juni 2013.
    [ DOI | Link | PDF | BibTeX ]
65. Precise generation of systems biology models from KEGG pathways
    Clemens Wrzodek, Finja Büchel, Manuel Ruff, Andreas Dräger und Andreas Zell.
    BMC Systems Biology, 7(1):15, Januar 2013.
    [ DOI | Link | PDF | BibTeX ]
66. Qualitative translation of relations from BioPAX to SBML qual
    Finja Büchel, Clemens Wrzodek, Florian Mittag, Andreas Dräger, Johannes Eichner, Nicolas Rodriguez, Nicolas Le Novère und Andreas Zell.
    Bioinformatics, 28(20):2648-2653, August 2012.
    [ DOI | Link | PDF | BibTeX ]
67. CySBML: a Cytoscape plugin for SBML
    Matthias König, Andreas Dräger und Hermann-Georg Holzhütter.
    Bioinformatics, 28(18):2402-2403, Juli 2012.
    [ DOI | Link | BibTeX ]
68. Controlled vocabularies and semantics in systems biology
    Mélanie Courtot, Nick Juty, Christian Knüpfer, Dagmar Waltemath, Anna Zhukova, Andreas Dräger, Michel Dumontier, Andrew Finney, Martin Golebiewski, Janna Hastings, Stefan Hoops, Sarah M. Keating, Douglas B. Kell, Samuel Kerrien, James Lawson, Allyson Lister, James Lu, Rainer Machne, Pedro Mendes, Matthew Pocock, Nicolas Rodriguez, Alice Villéger, Darren J. Wilkinson, Sarala Wimalaratne, Camille Laibe, Michael Hucka und Nicolas Le Novère.
    Molecular Systems Biology, 7(1):543, September 2011.
    [ DOI | Link | PDF | BibTeX ]
69. Inferring statin-induced gene regulatory relationships in primary human hepatocytes
    Adrian Schröder, Johannes Wollnik, Clemens Wrzodek, Andreas Dräger, Michael Bonin, Oliver Burk, Maria Thomas, Wolfgang E. Thasler, Ulrich M. Zanger und Andreas Zell.
    Bioinformatics, 27(18):2473-2477, Juli 2011.
    [ DOI | Link | PDF | BibTeX ]
70. JSBML: a flexible Java library for working with SBML
    Andreas Dräger, Nicolas Rodriguez, Marine Dumousseau, Alexander Dörr, Clemens Wrzodek, Nicolas Le Novère, Andreas Zell und Michael Hucka.
    Bioinformatics, 27(15):2167-2168, Juni 2011.
    [ DOI | Link | PDF | BibTeX ]
71. KEGGtranslator: visualizing and converting the KEGG PATHWAY database to various formats
    Clemens Wrzodek, Andreas Dräger und Andreas Zell. Bioinformatics, 27(16):2314-2315, Juni 2011.
    [ DOI | Link | PDF | BibTeX ]
72. ModuleMaster: A new tool to decipher transcriptional regulatory networks
    Clemens Wrzodek, Adrian Schröder, Andreas Dräger, Dierk Wanke, Kenneth W. Berendzen, Marcel Kronfeld, Klaus Harter und Andreas Zell.
    Biosystems, 99(1):79-81, Januar 2010.
    [ DOI | Link | PDF | BibTeX ]
73. BowTieBuilder: modeling signal transduction pathways
    Jochen Supper, Lucía Spangenberg, Hannes Planatscher, Andreas Dräger, Adrian Schröder und Andreas Zell.
    BMC Systems Biology, 3(1):67, Juni 2009.
    [ DOI | Link | PDF | BibTeX ]
74. SBML2LaTeX: Conversion of SBML files into human-readable reports
    Andreas Dräger, Hannes Planatscher, Dieudonné Motsou Wouamba, Adrian Schröder, Michael Hucka, Lukas Endler, Martin Golebiewski, Wolfgang Müller und Andreas Zell.
    Bioinformatics, 25(11):1455-1456, April 2009.
    [ DOI | Link | PDF | BibTeX ]
75. Modeling metabolic networks in C. glutamicum: a comparison of rate laws in combination with various parameter optimization strategies
    Andreas Dräger, Marcel Kronfeld, Michael J. Ziller, Jochen Supper, Hannes Planatscher, Jørgen B. Magnus, Marco Oldiges, Oliver Kohlbacher und Andreas Zell.
    BMC Systems Biology, 3(5):5, Januar 2009.
    [ DOI | Link | PDF | BibTeX ]
76. BioJava: an open-source framework for bioinformatics
    Richard C. G. Holland, Thomas Down, Matthew Pocock, Andreas Prlić, David Huen, Keith James, Sylvain Foisy, Andreas Dräger, Andy Yates, Michael Heuer und Mark J. Schreiber.
    Bioinformatics, 24(18):2096-2097, August 2008.
    [ DOI | Link | PDF | BibTeX ]
77. SBMLsqueezer: a CellDesigner plug-in to generate kinetic rate equations for biochemical networks
    Andreas Dräger, Nadine Hassis, Jochen Supper, Adrian Schröder und Andreas Zell.
    BMC Systems Biology, 2(1):39, April 2008.
    [ DOI | Link | PDF | BibTeX ]

1. Inferring transcriptional regulators for sets of co-expressed genes by multi-objective evolutionary optimization.
   Adrian Schröder, Clemens Wrzodek, Johannes Wollnik, Andreas Dräger, Dierk Wanke, Kenneth W. Berendzen und Andreas Zell. In IEEE Congress on Evolutionary Computation (CEC 2011), New Orleans, USA, Juni 2011. IEEE.
   [ DOI | Link | PDF ]
2. Network inference by considering multiple objectives: Insights from in vivo transcriptomic data generated by a synthetic network.
   Sandro Lambeck, Andreas Dräger und Reinhard Guthke. In Hamid R. Arabnia, Quoc-Nam Tran, Rui Chang, Matthew He, Andy Marsh, Ashu M. G. Solo und Jack Y. Yang, editors, International Conference on Bioinformatics and Computational Biology, BIOCOMP 2010, Band 2, Seiten 734-742. CSREA Press, Juli 2010.
   [ PDF ]
3. On the Benefits of Multimodal Optimization for Metabolic Network Modeling.
   Marcel Kronfeld, Andreas Dräger, Moritz Aschoff und Andreas Zell. In Ivo Grosse, Steffen Neumann, Stefan Posch, Falk Schreiber und Peter Stadler (Editoren), German Conference on Bioinformatics (GCB 2009), Band P-157 der Lecture Notes in Informatics, Seiten 191-200, Halle (Saale), Deutschland, September 2009. Deutsche Gesellschaft für Informatik.
   [ Link | PDF ]
4. Benchmarking Evolutionary Algorithms on Convenience Kinetics Models of the Valine and Leucine Biosynthesis in C. glutamicum.
   Andreas Dräger, Marcel Kronfeld, Jochen Supper, Hannes Planatscher, Jørgen B. Magnus, Marco Oldiges und Andreas Zell. In Dipti Srinivasan und Lipo Wang (Editoren), IEEE Congress on Evolutionary Computation (CEC 2007), Seiten 896-903, Singapur, September 2007. IEEE Computational Intelligence Society, IEEE Press.
   [ DOI | Link | PDF ]
5. Comparing Various Evolutionary Algorithms on the Parameter Optimization of the Valine and Leucine Biosynthesis in Corynebacterium glutamicum.
   Andreas Dräger, Jochen Supper, Hannes Planatscher, Jørgen B. Magnus, Marco Oldiges und Andreas Zell. In Dipti Srinivasan und Lipo Wang (Editoren), IEEE Congress on Evolutionary Computation (CEC 2007), Seiten 620-627, Singapur, September 2007. IEEE Computational Intelligence Society, IEEE Press.
   [ DOI | Link | PDF ]
6. Inferring gene regulatory networks by machine learning methods.
   Jochen Supper, Holger Fröhlich, Christian Spieth, Andreas Dräger und Andreas Zell. In David Sankoff, Lusheng Wang und Francis Chin (Editoren), Proceedings of the 5^th Asia-Pacific Bioinformatics Conference (APBC 2007), Band 5 of Series on Advances in Bioinformatics and Computational Biology, Seiten 247-256, 57 Shelton Street, Govent Garden, London WC2H 9HE, UK, Januar 2007. Imperial College Press.
   [ DOI | Link | PDF ]

1. Genome-Scale Metabolic Modeling of Escherichia coli and Its Chassis Design for Synthetic Biology Applications.
   Bashir Sajo Mienda und Andreas Dräger
   Computational Methods in Synthetic Biology, Mario Andrea Marchisio (Editor), Teil der Buchreihe Methods in Molecular Biology (MIMB, Band 2189), Seiten 217-229, 13. November 2020.
   [ Details | DOI | PubMed | PDF | BibTeX ]
2. Overview: Standards for Modeling in Systems Medicine.
   Andreas Dräger und Dagmar Waltemath
   Systems Medicine. Integrative, Qualitative and Computational Approaches. Olaf Wolkenhauer (Editor), Band 3, 2021, Seiten 245–353, 28. August 2020.
   [ Details | DOI | PubMed | PDF | BibTeX ]
3. Clinical Applications of Metabolic Models in SBML Format.
   Alina Renz, Reihaneh Mostolizadeh und Andreas Dräger
   Reference Module in Biomedical Sciences, Elsevier, 30. Januar 2020
   [ Details | DOI | PDF | PubMed | BibTeX ]
4. The Systems Biology Graphical Notation: Current Status and Applications in Systems Medicine.
   Vasundra Touré, Andreas Dräger, Augustin Luna, Ugur Dogrusoz und Adrien Rougny
   Reference Module in Biomedical Sciences, Elsevier, 25. Januar 2020
   [ Details | DOI | PDF | PubMed | BibTeX ]
5. Insights into Dynamic Network States Using Metabolomic Data.
   Reihaneh Mostolizadeh​​​​​, Andreas Dräger und Neema Jamshidi. In: Angelo D’Alessandro (Editor) High-Throughput Metabolomics. Methods in Molecular Biology, Band 1978, Kapitel, Seiten 243-258. Humana, New York, NY, 23. Mai 2019.
   [ Details | DOI | link | PubMed | BibTex ]
6. Metabolic Networks.
   Andreas Dräger und Hannes Planatscher. Encyclopedia of Systems Biology, Kapitel, Seiten 1249-1251. Springer-Verlag, Springer New York Heidelberg Dorodrecht London, August 2013.
   [ DOI | link ]
7. Parameter Estimation, Metabolic Network Modeling.
   Andreas Dräger und Hannes Planatscher. Encyclopedia of Systems Biology, Kapitel, Seiten 1627-1631. Springer-Verlag, Springer New York Heidelberg Dorodrecht London, August 2013.
   [ DOI | link ]
8. Automating mathematical modeling of biochemical reaction networks.
   Andreas Dräger, Adrian Schröder und Andreas Zell. Systems Biology for Signaling Networks, Band 1 von Systems Biology, Kapitel, Seiten 159-205. Springer-Verlag, Juli 2010.
   [ DOI | link ]

1. FROG Analysis Ensures the Reproducibility of Genome Scale Metabolic Models
   Karthik Raman, Miroslav Kratochvíl, Brett G. Olivier, Matthias König, Pratyay Sengupta, Dinesh Kumar Kuppa Baskaran, Tung V. N. Nguyen, Daniel Lobo, St Elmo Wilken, Krishna Kumar Tiwari, Aswathy K. Raghu, Indumathi Palanikumar, Lavanya Raajaraam, Maziya Ibrahim, Sanjaay Balakrishnan, Shreyanash Umale, Frank T. Bergmann, Tanisha Malpani, Venkata P. Satagopam, Reinhard Schneider, Moritz E. Beber, Sarah M. Keating, Mihail Anton, Alina Renz, Meiyappan Lakshmanan, Dong-Yup Lee, Lokanand Koduru, Reihaneh Mostolizadeh, Oscar Dias, Emanuel Cunha, Alexandre Oliveira, Yi Qing Lee, Karsten Zengler, Rodrigo Santibáñez-Palominos, Manish Kumar, Matteo Barberis, Bhanwar Lal Puniya, Tomáš Helikar, Hoang V. Dinh, Patrick F. Suthers, Costas D. Maranas, Isabella Casini, Seyed Babak Loghmani, Nadine Veith, Nantia Leonidou, Feiran Li, Yu Chen, Jens Nielsen, GaRyoung Lee, Sang Mi Lee, Gi Bae Kim, Pedro T. Monteiro, Miguel C. Teixeira, Hyun Uk Kim, Sang Yup Lee, Ulf W. Liebal, Lars M. Blank, Christian Lieven, Chaimaa Tarzi, Claudio Angione, Manga Enuh Blaise, Çelık Pinar Aytar, Mikhail Kulyashov, llya Akberdin, Dohyeon Kim, Sung Ho Yoon, Zhaohui Xu, Jyotshana Gautam, William T. Scott, Peter J. Schaap, Jasper J. Koehorst, Cristal Zuñiga, Gabriel Canto-Encalada, Sara Benito-Vaquerizo, Ivette Parera Olm, Maria Suarez-Diez, Qianquian Yuan, Hongwu Ma, Mohammad Mazharul Islam, Jason A. Papin, Francisco Zorrilla, Kiran Raosaheb Patil, Arianna Basile, Juan Nogales, Granado San León, Freddy Castillo-Alfonso, Roberto Olivares-Hernández, Gabriel Vigueras-Ramírez, Henning Hermjakob, Andreas Dräger und Rahuman S. Malik-Sheriff
   BioRxiv, 26. September 2024
   [ Details | DOI | PDF | PubMed | BibTeX ]
2. Genome-scale metabolic model of Staphylococcus epidermidis ATCC 12228 matches in vitro conditions
   Nantia Leonidou, Alina Renz, Benjamin Winnerling, Anastasiia Grekova, Fabian Grein und Andreas Dräger
   BioRxiv, 20. Dezember 2023
   [ Details | DOI | Vorabdruck | PDF | PubMed | BibTeX ]
3. Metabolic Modeling Elucidates Phenformin and Atpenin A5 as Broad-Spectrum Antiviral Drugs
   Alina Renz, Mirjam Hohner, Maximilian Breitenbach, Jonathan Josephs-Spaulding, Johanna Dürrwald, Lena Best, Raphaël Jami, Georgios Marinos, Nantia Leonidou, Filipe Cabreiro, Andreas Dräger, Michael Schindler und Christoph Kaleta
   Preprints 2023, 30. November 2023
   [ Details | DOI | PDF | PubMed | BibTeX ]
4. Standard-GEM: Standardization of open-source genome-scale metabolic models
   Mihail Anton,  Eivind Almaas, Rui Benfeitas, Sara Benito-Vaquerizo, Lars M. Blank, Andreas Dräger, John M. Hancock, Cheewin Kittikunapong, Matthias König, Feiran Li, Ulf W. Liebal, Hongzhong Lu, Hongwu Ma, Radhakrishnan Mahadevan, Adil Mardinoglu, Jens Nielsen, Juan Nogales, Marco Pagni, Jason A. Papin, Kiran Raosaheb Patil, Nathan D. Price, Jonathan L. Robinson, Benjamín J. Sánchez, Maria Suarez Diez, Snorre Sulheim, L. Thomas Svensson, Bas Teusnik, Wanwipa Vongsangnak, Hao Wang, Ahmad A. Zeidan und Eduard J. Kerkhoven
   BioRxiv, 23. März 2023.
   [ Details | DOI | PDF | PubMed | BibTeX ]
5. ProDGe: investigating protein-protein interactions at the domain level
   Finja Büchel, Clemens Wrzodek, Florian Mittag, Andreas Dräger, Adrian Schröder und Andreas Zell.
   Nature Precedings, August 2011.
   [ DOI | link | PDF ]

1. Broad-spectrum antiviral agent comprising phenformin
   Michael Schindler, Christoph Kaleta, Alina Renz, Andreas Dräger, Mirjam Hohner, Lena Best, Jonathan Josephs-Spaulding
   Witte, Weller & Partner Patentanwälte mbH
   Antragsnummer: EP22170481.0, Datum: 28.04.2022
2. Broad-spectrum antiviral agent comprising atpenin A5
   Michael Schindler, Christoph Kaleta, Alina Renz, Andreas Dräger, Mirjam Hohner, Lena Best, Jonathan Josephs-Spaulding
   Witte, Weller & Partner Patentanwälte mbH
   Antragsnummer: EP22170485.1, Datum: 28.04.2022

1. Computationally Modeling the Human Microbiome of the Respiratory Tract
   Andreas Dräger
   Seminar im Rahmen des Symposiums “The Colours of Biotechnology” an der Universiät Heidelberg, Heidelberg, Deutschland
   https://molbioevents.wixsite.com/molbio-symposium/
2. Systematische Modellierung des Mikrobioms im Menschlichen Atmungstrakt
   Andreas Dräger
   JUNITE – Netzwerk Junge Infektionsmedizin e.V. am 4. März 2023 in Halberstadt, Deutschland
   https://www.netzwerk-infektionsmedizin.de
3. Model Representation and Exchange in Systems Biology
   Andreas Dräger
   SmartAge ITN Winter School 2023 des Universitätsklinikums Kiel am 31. Januar 2023 in Kiel, Deutschland (per Zoom)
4. Computationally Modeling the Human Microbiome of the Respiratory Tract
   Andreas Dräger
   1st International Conference on Antimicrobial Computational Pharmacology am 14. Dezember 2022 in Melbourne, Australien (per Zoom)
5. Computationally Modeling the Human Microbiome of the Respiratory Tract
   Andreas Dräger
   Teil der Vortragsreihe „Modeling Discussion at DTU Biosustain” am 12. Dezember 2022 an der Dänisch-Technischen Universität zu Kopenhagen, Dänemark (per Zoom)
6. Computationally Modeling the Human Microbiome of the Respiratory Tract
   Andreas Dräger
   Internationale Systembiologie-Konferenz (ICSB) 2022 am 9. Oktober 2022 in Berlin, Deutschland
7. Introduction to SysMod 2022
   Andreas Dräger
   SysMod-Tagung im Rahmen der ISMB am 11. Juli 2022 in Madison, Wisconsin, USA
8. SBMLWebApp: Web-based Simulation, Steady-State Analysis, and Parameter Estimation of Systems Biology Models
   Andreas Dräger, Takahiro G. Yamada, Kaito Ii, Matthias König, Martina Feierabend, and Akira Funahashi
   Rocky Mountain Bioinformatics Annual Conference 2021 am 2. Dezember 2021
9. Day 2 closing remarks
   Andreas Dräger
   Virtuelle SysMod-Tagung im Rahmen der ISMB am 14. Juli 2020
10. How Animated Time-Series Data bring Metabolic Network Models to Life, e.g., of COVID-19
    Andreas Dräger
    Predictive Analytics World Healthcare, Sitzung "Corona Community Special" am 11. Mai 2020
11. Modeling the Human Nasal Microbiome
    Alina Renz, Reihaneh Mostolizadeh, Niklas Henle, Pia Rautenstrauch und Andreas Dräger
    Jahrestagung des Deutschen Zentrums für Infektionsforschung, Bad Nauheim (22. November 2019)
12. Introduction to SysMod 2019
    Andreas Dräger
    ISMB/ECCB 2019, Basel, CH (22. Juli 2019)
13. InSilico: an Eclipse-based framework for plugin-development and standards interoperability
    Andreas Dräger, Roman Schulte und Matthias König
    HARMONY 2019, Pasadena, CA, USA (25. März 2019)
14. Visualizing Metabolic Network Dynamics through Time-Series Metabolomics Data
    Lea F. Buchweitz, James T. Yurkovich, Christoph M. Blessing, Veronika Kohler, Fabian Schwarzkopf, Zachary A. King, Laurence Yang, Freyr Jóhannsson, Ólafur Sigurjónsson, Óttar Rolfsson, Julian Heinrich und Andreas Dräger, COMBINE 2018, Boston, MA, USA (10. Oktober 2018)
15. Representation of ME-Models in SBML
    Marc Alexander Voigt, Colton J. Lloyd, Laurence Yang, Zachary A. King, Oliver Kohlbacher, Kay Nieselt und Andreas Dräger
    COMBINE 2018, Boston, MA, USA (11. Oktober 2018)
16. Model-Based Prediction of Yersinia enterocolitica Infection Outcome
    Janina Geißert, Martin Eichner, Erwin Bohn, Reihaneh Mostolizadeh, Andreas Dräger, Ingo B. Autenrieth, Sina Beier und Monika Schütz
    COMBINE 2018, Boston, MA, USA (11. Oktober 2018)
17. Modeling of Potentially Virulence-Associated Metabolic Pathways in Pseudomonas aeruginosa PA14 Including Experimental Verification
    Alina Renz, Erwin Bohn, Monika Schütz und Andreas Dräger
    COMBINE 2018, Boston, MA, USA (12. Oktober 2018)
18. Visualization and Creation of Biochemical Networks with Escher
    Andreas Dräger, Zachary A. King, James T. Yurkovich, Christoph M. Blessing, Devesh Khandelwal, Ali Ebrahim, Nikolaus Sonnenschein, Nathan E. Lewis und Bernhard O. Palsson
    COMBINE 2017, Mailand, Italien (11. Oktober 2017).
19. The JSBML project: a fully featured Java API for working with systems biological models
    Nicolas Rodriguez, Thomas M. Hamm, Roman Schulte, Leandro Watanabe, Ibrahim Y. Vazirabad, Victor Kofia, Chris J. Myers, Akira Funahashi, Nicolas Le Novère, Michael Hucka und Andreas Dräger
    COMBINE 2017, Mailand, Italien (10. Oktober 2017).
20. Visualization and Creation of Biochemical Networks with Escher
    Andreas Dräger, Zachary A. King, James T. Yurkovich, Christoph Blessing, Devesh Khandelwal, Ali Ebrahim, Nikolaus Sonnenschein, Nathan E. Lewis, Bernhard O. Palsson.
    BioVis Special Interest Group meeting während der ISMB 2017 in Prag, Tschechische Republik (24 Juli 2017).
21. The ZBIT Systems Biology Software and Web-Service Collection
    Andreas Dräger
    Eingeladener Vortrag, Helmholtz-Zentrum München, Deutschland (15. November 2016).
22. The ZBIT Systems Biology Software and Web-Service Collection
    Andreas Dräger
    COMBINE 2016, Newcastle, UK (21. Setember 2016). [ Folien ]
23. The ZBIT Systems Biology Software and Web-Service Collection
    Andreas Dräger
    Eingeladener Vortrag, Universität Luxemburg, Esch Belval, Luxemburg (1. September 2016).
24. Biochemical Pathways and Large-Scale Metabolic Networks
    Andreas Dräger und Nathan E. Lewis - Lecture day on reconstruction and modeling of metabolic systems at genome-scale Summer School
    Eingeladener Vortrag, SIB Siwss Institut für Bioinformatik, Lausanne, Schweitz (30. August 2016).
25. Recent Software and Services to Support the SBML Community
    Michael Hucka, Frank T. Bergmann, Andreas Dräger, Harold F. Gómez, Sarah M. Keating, Nicolas Rodriguez, Lucian P. Smith
    Erster SysMod Special Interest Group meeting während der ISMB 2016, Orlando, FL, USA (9. July 2016).
    [ DOI ]
26. The ZBIT systems biology software and web service collection
    Andreas Dräger​​​​​​​​​​​​​​.
    Erster SysMod Special Interest Group meeting während der ISMB 2016, Orlando, FL, USA (9. July 2016).
    [ DOI | Folien ]
27. New Standard Resources for Systems Biology: BiGG 2 Database and Visual Pathway Editing with Escher
    Andreas Dräger​​​​​​​​​​​​​​, Zachary A. King, Justin S. Lu, Ali Ebrahim, Nikolaus Sonnenschein, Philip C. Miller, Joshua A. Lerman, Bernhard O. Palsson und Nathan E. Lewis.
    COMBINE 2015, Salt Lake City, UT, USA (13. Oktober 2015).
    [ Folien ]
28. SED-ML in the simulation core library
    Andreas Dräger​​​​​​​​​​​​​​. COMBINE 2013, Paris, Frankreich.
29. From KEGG to dynamic pathway models: a collection of tools to facilitate the modeling of biochemical networks
    Andreas Dräger​​​​​​​​​​​​​​
    COMBINE 2011, Heidelberg, Deutschland.
30. JSBML—The SBML Java™ library
    Andreas Dräger​​​​​​​​​​​​​​ und Nicolas Rodriguez. HARMONY Workshop 2011
    Eingeladener Vortrag, New York, USA (18. April 2011).
31. Context-based generation of kinetic equations with SBMLsqueezer 1.3
    Andreas Dräger​​​​​​​​​​​​​​, Sandra Nitschmann, Alexander Dörr, Johannes Eichner, Michael J. Ziller und Andreas Zell
    COMBINE 2010, Edinburg (9. Oktober 2010)
    [ Folien​​​​​​​ ]
32. Inferring Genetic Networks from Gene Expression Data
    Andreas Dräger​​​​​​​​​​​​​​, Nora Speer, Christian Spieth, Jochen Supper und Andreas Zell
    Biotechnica 2009, Internationale Messe für Biotechnologie, eingeladener Vortrag, Hannover, Deutschland (8 Oktober 2009).
33. Metabolic modeling of Corynebacterium glutamicum: a comparison of rate laws in combination with various parameter optimization strategies
    Andreas Dräger​​​​​​​​​​​​​​, Marcel Kronfeld, Michael J Ziller, Jochen Supper, Hannes Planatscher, Jørgen B. Magnus, Marco Oldiges, Oliver Kohlbacher und Andreas Zell
    ACHEMA 2009, 29. internationaler Ausstellungskongress für chemische Technik, Umweltschutz und Biotechnologie, eingeladener Vortrag, Frankfurt am Main, Deutschland (13. May 2009).

1. Model-driven Elucidation of Antiviral Drug Targets
   Mirjam Hohner, Maximilian Breitenbach, Alina Renz, Jonathan Josephs-Spaulding, Lena Best, Georgios Marinos, Johanna Dürrwald, Andreas Dräger, Christoph Kaleta, Michael Schindler
   DZIF autumn school, Lübeck, September 2022
2. MCC: The automated curation of Mass and Charge Curation in genome-scale metabolic reconstruction
   Reihaneh Mostolizadeh, Finn Mier und Andreas Dräger
   7^th Annual SysMod Meeting im Rahmen der ISMB 2022 am 11. Juli 2022 in Madison, Wisconsin, USA, 
3. New workflow predicts drug targets against SARS-CoV-2 via metabolic changes in infected cells
   Nantia Leonidou, Alina Renz, Reihaneh Mostolizadeh und Andreas Dräger
   7^th Annual SysMod Meeting im Rahmen der ISMB 2022 am 11. Juli 2022 in Madison, Wisconsin, USA, 
4. Computationally Modeling the Human Microbiome of the Respiratory Tract
   Andreas Dräger
   Joint Annual DZIF Meeting 2022, Stuttgart, 1.-3. Juni
5. The Systems Biology Simulation Core Library
   Hemil Panchiwala, Shalin Shah, Hannes Planatscher, Mykola Zakharchuk, Matthias König und Andreas Dräger
   ISMB/ECCB 2021, virtuelle Konferenz
   [ Link ]
6. Curating and Comparing 114 Strain-Specific Genome-Scale Metabolic Models of Staphylococcus aureus
   Alina Renz und Andreas Dräger
   ISMB/ECCB 2021, virtuelle Konferenz
   [ Link ]
7. FBA reveals potential targets for antiviral therapies against SARS-CoV-2
   Alina Renz, Lina Widerspick und Andreas Dräger
   7^th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2021), virtuell, 1.-2. März, 2021.
   [ Link ]
8. Computational Model Informs Effective Control Interventions Against Y. enterocolitica Co-Infection
   Reihaneh Mostolizadeh und Andreas Dräger
   7^th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2021), virtuell, 1.-2. März, 2021.
   [ Link ]
9. Tissue-specific reconstruction of constraint-based metabolic models based on ReconX
   Nantia Leonidou, Alina Renz, Reihaneh Mostolizadeh und Andreas Dräger
   7^th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2021), virtuell, 1.-2. März, 2021.
   [ Link ]
10. Modeling the Microbiome of the Human Respiratory Tract to Combat Infections
    Andreas Dräger
    7^th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2021), virtuell, 1.-2. März, 2021.
    [ Link ]
11. High-quality genome-scale reconstruction of Corynebacterium glutamicum ATCC 13032
    Martina Feierabend, Alina Renz, Elisabeth Zelle, Katharina Nöh, Wolfgang Wiechert und Andreas Dräger
    7^th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2021), virtuell, 1.-2. März, 2021.
    [ Link ]
12. Integration of Systems Biology and Metabolic Modeling for Power-to-Gas Applications with Methanothermobacter spp.
    Isabella Casini, Timothy Mc Cubbin, Andreas Dräger, Esteban Marcellin, Largus T. Angernent und Bastian Molitor
    7^th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2021), virtuell, 1.-2. März, 2021.
    [ Link ]
13. A Web-based Visual Analytics Application for Biological Networks
    Michael Krone, Andreas Dräger, Ebru Cobanoglu, Manuel O. Harke, Miriam Hoene, Cora Weigert und Rainer Lehmann.
    EUROVIS 2020, virtuelle Konferenz. Editoren: J. Byška und S. Jänicke.
    [ DOI | YouTube | PDF | BibTeX ]
14. Building a reference map of the interaction network in the human nasal microbial community
    Reihaneh Mostolizadeh, Alina Renz, Anastasia Grekova, and Andreas Dräger
    ISMB 2020, virtuelle Konferenz
15. FBA reveals guanylate kinase as a potential target against SARS-CoV-2
    Alina Renz, Lina Widerspick, Andreas Dräger.
    ISMB 2020, virtuelle Konferenz
    [ YouTube ]
16. Visualizing metabolic network dynamics through time-series metabolomics data
    Lea F. Buchweitz, James T. Yurkovich, Christoph Blessing, Veronika Kohler, Fabian Schwarzkopf, Zachary A. King, Laurence Yang, Freyr Jóhannsson, Ólafur Sigurjónsson, Óttar Rolfsson, Julian Heinrich und Andreas Dräger.
    Internationale Konferenz zur Systembiologie (ICSB), Okinawa, Japan
17. The Systems Biology Graphical Notation: a standardised representation of biological maps
    Vasundra Touré, Alexander Mazein, Adrien Rougny, Andreas Dräger, Ugur Dogrusoz, Michael Blinov und Augustin Luna
    Internationale Konferenz zur Systembiologie (ICSB), Okinawa, Japan
18. Representation of ME-Models in SBML
    Marc Alexander Voigt, Colton J. Lloyd, Laurence Yang, Zachary A. King, Oliver Kohlbacher, Kay Nieselt und Andreas Dräger
    COBRA 2018, Seattle, WA, USA
19. Metabolic Network Reconstruction of Treponema pallidum ssp. pallidum
    Silvia Morini, Isabella Casini, Reihaneh Mostolizadeh, Thomas M. Hamm, Kay Nieselt und Andreas Dräger
    COBRA 2018, Seattle, WA, USA
20. Modeling of Potentially Virulence-Associated Metabolic Pathways in Pseudomonas aeruginosa PA14 Including Experimental Verification
    Alina Renz, Erwin Bohn, Monika Schütz und Andreas Dräger
    COBRA 2018, Seattle, WA, USA
21. Model-based Prediction of Yersinia enterocolitica Infection Outcome
    Janina Geißert, Martin Eichner, Erwin Bohn, Reihaneh Mostolizadeh, Andreas Dräger, Ingo B. Autenrieth, Sina Beier, Monika Schütz
    SysMod Special Interest Group Meeting während ISMB 2018 in Chicago, Il, USA.
22. Visualization and creation of biochemical networks with Escher
    Andreas Dräger, Zachary A. King, James T. Yurkovich, Christoph Blessing, Devesh Khandelwal, Ali Ebrahim, Nikolaus Sonnenschein, Nathan E. Lewis und Bernhard O. Palsson. [version 1; not peer reviewed]. F1000Research 2017, 6(ISCB Comm J):1570 [ DOI ]
23. New standard resources for systems biology: BiGG Models database and the visual pathway editor Escher
    Andreas Dräger, Zachary A. King, Justin S. Lu et al. [v1; not peer reviewed]. Presented at the BioVis Special Interest Group meeting at ISMB 2016 in Orlando, FL, USA, 6^th Conference on Systems Biology of Mammalian Cells (SBMC) 2016 in Munich, Germany, the 6^th Conference on Modeling Biological Networks (COMBINE) 2015 in Salt Lake City, UT, USA F1000Research 2016, 5:1928 [ DOI | PDF ]
24. Using Time Course Metabolomics to Elucidate Genome-Scale Pathway Utilization for CHO-S Cell Lines in Batch Culture
    Alex Thomas, Andreas Dräger und Nathan Lewis. Hackathon on Resources for Modeling in Biology (HARMONY 2015), Wittenberg, Germany (22.-25. April 2015). [PDF ]
25. Support for Flux Balance Constraints Models in JSBML
    Nicolas Rodriguez, Alex Thomas, Michael Hucka, Nicolas Le Novère, Bernhard Ø Palsson und Andreas Dräger. 3^rd Conference on Constraint-Based Reconstruction and Analysis, Charlottesville, VA, USA (20.-23. Mai 2014). 
26. Modelling IL-6 mediated regulation of ADME genes
    Roland Keller, Marcus Klein, Maria Thomas, Ute Metzger, Markus F. Templin, Thomas O. Joos, Stephanie Hoffmann, Benjamin Kandel, Andreas Dräger, Ulrich M. Zanger und Andreas Zell. 20^th International Symposium on Microsomes and Drug Oxidations, 2014. [ link ]
27. Modeling and simulating the effects of atorvastatin on the central carbon metabolism of rat hepatocytes using SBMLsimulator
    Andreas Dräger, Ute Hofmann, Roland Keller, Stephanie Tscherneck, Benjamin Kandel, Maria Thomas, Marcus Klein, Klaus Maier, Klaus Mauch, Ulrich M. Zanger und Andreas Zell. 4^th Conference on Systems Biology of Mammalian Cells (SBMC), 2012. [ PDF ]
28. JSBML: a flexible and entirely Java-based library for working with SBML
    Nicolas Rodriguez, Marine Dumousseau, Andreas Dräger, Clemens Wrzodek, Alexander Dörr, Sarah M. Keating, Akiya Jouraku, Nicolas Le Novère, Andreas Zell und Michael Hucka. COMBINE 2010, Edinburg, UK. [ PDF ]
29. A Tool for Interactive Comparative Sequence Analysis
    Andreas Dräger, Dietrich H. Nies und Stefan Posch. German Conference on Bioinformatics (GCB) 2006, Tübingen, Deutschland. [ PDF ]