TüBMI 2023
Schedule: 23 June 2023, 9 am - 5 pm
Venue: Sand 6/7, Lecture Hall F119
With our 12th TüBMI (former TüBiT) we are happy to be back at the University after the COVID-19 pandemic, one virtual TüBiT, and last year's TüBMI at the Westspitze. 27 PhD students will present their research with talks and posters and we are looking forward to have fruitful discussions and to bring together the Bio- and Medical Informatics research community in Tübingen.
We are very pleased that our alumna Dr. Magdalena Feldhahn (CeGaT) will be our guest to give a keynote talk.
Program
9:00 am - Welcome
Session I
Chair: Michael Krone
9:10 am: BMI Flashlight
Brief Introduction of TüBMI research groups by their group leaders
9:40 am: Talk
FLASHQuant: a software tool for label-free quantification in top-down proteomics
10:05 am - Poster Session & Coffee Break
Session II
Chair: Sven Nahnsen
11:05 am: Talk
Applying genome graphs to genome-wide association studies
11:30 am: Talk
nf-core/sarek: a pipeline for efficient germline, tumor-only, and somatic variant calling on different compute infrastructures
11:55 am: Talk
DNA methylation site detection by deep learning approaches
12:20 pm - Lunch Break
Session III
Chair: Nico Pfeifer
1:20 pm: Keynote Lecture: Dr. Magdalena Feldhahn (CeGaT)
20 years with individualized peptide vaccines - From a diploma thesis to the application in patient care
2:05 pm: Talk
visMOP – A Visual Analytics Approach for Multi-omics Pathways
2:30 pm: Talk
Compendium of specialized metabolite biosynthetic diversity encoded in bacterial genomes
2:55 pm - Poster Session & Coffee Break
Session IV
Chair: Stephan Ossowski
3:55 pm: Talk
Inherently Interpretable Kernel Networks in Healthcare
4:20 pm: Talk
GO-Compass: Visual Navigation of Multiple Lists of GO terms
4:45 pm: Poster Prize Closing remarks
4:55 pm: PhD Round Table
Poster
- Machine learning models predicting response to immune checkpoint inhibitors (ICI)
- Pangenome Graphs
- FHAUC: Privacy Preserving AUC Calculation for Federated Learning using Fully Homomorphic Encryption
- Visual linkage and interactive features of Evidente for an enhanced analysis of SNP-based phylogenies
- PTMVision: An Interactive Visualization Platform for Post-Translational Modifications of Proteins
- Attri-Net:Inherently Interpretable Multi-Label Classification Using Class-Specific Counterfactuals
- Phylogenetic Context Using Phylogenetic Outlines
- Reconstruction of Strain-specific Metabolic Models of Staphylococcus haemolyticus
- HCV 2k/1b Variant Detection with Machine Learning Methods
- S3-CIMA: Supervised spatial single-cell image analysis for the identification of disease-associated cell type compositions in tissue
- Sensitive inference of gene age using GenEra
- Unveiling the Hidden Players: Exploring Transposable Elements in Brown Algae
- An efficient privacy-preserving multi-party sorting protocol
- Simulating Longitudinal Brain Aging Using Diffusion Models
- The MICCAI Learn2Learn Challenge
- MMonitor - tracking microbes with long read metagenomics