PanGee is a software tool that computes the PanGenome from a given whole genome alignment (WGA). The computation refines homologous genes groups through a subsequent Reciprocal Best Hit-BLAST approach.  For this, we make use of the SuperGenome data structure that offers the possibility to efficiently detect aligned homologs in the WGA.

Using PanGee

Jar-File: here

The source code for PanGee is available on GitHub, accompanied by the sources for all additional tools coming with PanGee.