Uni-Tübingen

Publications

2020

 

A truncated singleton NLR causes hybrid necrosis in Arabidopsis thaliana.
Barragan AC, Collenberg M, Wang J, Lee RRQ, Cher WY, Rabanal FA, Ashkenazy H, Weigel D, Chae E.
Mol Biol Evol. 2020 Sep 23:msaa245.
doi: 10.1093/molbev/msaa245.

The integral spliceosomal component CWC15 is required for development in Arabidopsis.
Slane D, Lee CH, Kolb M, Dent C, Miao Y, Franz-Wachtel M, Lau S, Maček B, Balasubramanian S, Bayer M, Jürgens G.
Sci Rep. 2020 Aug 7;10(1):13336.
doi: 10.1038/s41598-020-70324-3.

Constitutive Activation of Leucine-Rich Repeat Receptor Kinase Signaling Pathways by BAK1-Interacting Receptor-Like Kinase 3 Chimera.
Hohmann U, Ramakrishna P, Wang K, Lorenzo-Orts L, Nicolet J, Henschen A, Barberon M, Bayer M, Hothorn M.
Plant Cell. 2020 Aug 13:tpc.00138.2020.
doi: 10.1105/tpc.20.00138.

Coordinated Activation of ARF1 GTPases by ARF-GEF GNOM Dimers Is Essential for Vesicle Trafficking in Arabidopsis.
Brumm S, Singh MK, Nielsen ME, Richter S, Beckmann H, Stierhof YD, Fischer AM, Kumaran M, Sundaresan V, Jürgens G.
Plant Cell. 2020 Jun 2. pii: tpc.00240.2020.
doi: 10.1105/tpc.20.00240.

Two unequally redundant ‘helper’ immune receptor families mediate Arabidopsis intracellular ‘sensor’ immune receptor functions.
Saile S, Jacob P, Castel B, Jubic LM, Salas-Gonzalez I, Bäcker M, Jones JDG, Dangl JL, El Kasmi F.
PLOS Biology, Published: September 14, 2020,
https://doi.org/10.1371/journal.pbio.3000783

 

Dual-Reporting Transcriptionally Linked Genetically Encoded Fluorescent Indicators Resolve the Spatiotemporal Coordination of Cytosolic Abscisic Acid and Second Messenger Dynamics in Arabidopsis.
Waadt R, Köster P, Andrés Z, Waadt C, Bradamante G, Lampou K, Kudla J, Schumacher K. (2020)
Plant Cell. 2020 May 29. pii: tpc.00892.2019.
doi: 10.1105/tpc.19.00892.

Microbial Effector Proteins – A Journey through the Proteolytic Landscape, Trends in Microbiology
Gautier Langin, Paul Gouguet, Suayib Üstün (2020)
http://www.sciencedirect.com/science/article/pii/S0966842X20300469
https://doi.org/10.1016/j.tim.2020.02.010.

Multi-level analysis of the interactions between REVOLUTA and MORE AXILLARY BRANCHES 2 in controlling plant development reveals parallel, independent and antagonistic functions.
Hong SY, Botterweg-Paredes E, Doll J, Eguen T, Blaakmeer A, Matton S, Xie Y, Lunding BS, Zentgraf U, Guan C, Jiao Y, Wenkel S.
Development. 2020 Apr 28. pii: dev.183681.
doi: 10.1242/dev.183681.

The biogenesis of CLEL peptides involves several processing events in consecutive compartments of the secretory pathway.
Stührwohldt N, Scholl S, Lang L, Katzenberger J, Schumacher K, Schaller A.
Elife. 2020 Apr 16;9. pii: e55580.
doi: 10.7554/eLife.55580.

Blue Native Polyacrylamide Gel Electrophoresis (BN-PAGE) for the Analysis of Protein Oligomers in Plants.
Na Ayutthaya PP, Lundberg D, Weigel D, Li L.
Curr Protoc Plant Biol. 2020 Jun;5(2):e20107.
doi: 10.1002/cppb.20107.

miRNA target identification and prediction as a function of time in gene expression data.
Grigaitis P, Starkuviene V, Rost U, Serva A, Pucholt P, Kummer U.
RNA Biol. 2020 Apr 22:1-11.
doi: 10.1080/15476286.2020.1748921.

High-Level Expression, Purification and Initial Characterization of Recombinant Arabidopsis Histidine Kinase AHK1.
Hofmann A, Müller S, Drechsler T, Berleth M, Caesar K, Rohr L, Harter K, Groth G.
Plants (Basel). 2020 Mar 1;9(3). pii: E304.
doi: 10.3390/plants9030304.

The Kinesin-8 Kip3 Depolymerizes Microtubules with a Collective Force-Dependent Mechanism.
Bugiel M, Chugh M, Jachowski TJ, Schäffer E, Jannasch A.
Biophys J. 2020 Mar 14. pii: S0006-3495(20)30233-2.
doi: 10.1016/j.bpj.2020.02.030.

Arabidopsis thaliana WRKY25 Transcription Factor Mediates Oxidative Stress Tolerance and Regulates Senescence in a Redox-Dependent Manner.
Doll J, Muth M, Riester L, Nebel S, Bresson J, Lee HC, Zentgraf U.
Front Plant Sci. 2020 Jan 23;10:1734.
doi: 10.3389/fpls.2019.01734. eCollection 2019.

Atypical Resistance Protein RPW8/HR Triggers Oligomerization of the NLR Immune Receptor RPP7 and Autoimmunity.
Li L, Habring A, Wang K, Weigel D.
Cell Host Microbe. 2020 Feb 11. pii: S1931-3128(20)30051-2.
doi: 10.1016/j.chom.2020.01.012. [Epub ahead of print]

Perception of Agrobacterium tumefaciens flagellin by FLS2<sup>XL</sup> confers resistance to crown gall disease.
Fürst U, Zeng Y, Albert M, Witte AK, Fliegmann J, Felix G.
Nat Plants. 2020 Jan;6(1):22-27.
doi: 10.1038/s41477-019-0578-6. Epub 2020 Jan 16.

Transcriptomic Profiling of the Arabidopsis Embryonic Epidermis Using FANS in Combination with RNAseq.
Slane D, Berendzen KW, Witthöft J, Jürgens G.
Methods Mol Biol. 2020;2122:151-164.
doi: 10.1007/978-1-0716-0342-0_12.

 

 

2019

Help wanted: helper NLRs and plant immune responses.
Jubic LM, Saile S, Furzer OJ, El Kasmi F, Dangl JL.
Curr Opin Plant Biol. 2019 Aug;50:82-94.
doi: 10.1016/j.pbi.2019.03.013.

Surface sensor systems in plant immunity.
Albert I, Hua C, Nurnberger T, Pruitt R, Zhang L.
Plant Physiol. 2019 Dec 10. pii: pp.01299.2019.
doi: 10.1104/pp.19.01299.

MERLIN: a novel BRET-based proximity biosensor for studying mitochondria-ER contact sites.
Hertlein V, Flores-Romero H, Das KK, Fischer S, Heunemann M, Calleja-Felipe M, Knafo S, Hipp K, Harter K, Fitzgerald JC, García-Sáez AJ.
Life Sci Alliance. 2019 Dec 9;3(1). pii: e201900600.
doi: 10.26508/lsa.201900600.

Arabidopsis WRKY53, a Node of Multi-Layer Regulation in the Network of Senescence.
Zentgraf U, Doll J.
Plants (Basel). 2019 Dec 6;8(12). pii: E578.
doi: 10.3390/plants8120578.

WUSCHEL acts as an auxin response rheostat to maintain apical stem cells in Arabidopsis.
Ma Y, Miotk A, Šutiković Z, Ermakova O, Wenzl C, Medzihradszky A, Gaillochet C, Forner J, Utan G, Brackmann K, Galván-Ampudia CS, Vernoux T, Greb T, Lohmann JU.
Nat Commun. 2019 Nov 8;10(1):5093.
doi: 10.1038/s41467-019-13074-9.

Square one: zygote polarity and early embryogenesis in flowering plants.
Wang K, Chen H, Miao Y, Bayer M. (2019)
Curr Opin Plant Biol. 2019 Nov 11. pii: S1369-5266(19)30079-2.
doi: 10.1016/j.pbi.2019.10.002.

Pathogen-induced pH changes regulate the growth-defense balance in plants.
Kesten C, Gámez-Arjona FM, Menna A, Scholl S, Dora S, Huerta AI, Huang HY, Tintor N, Kinoshita T, Rep M, Krebs M, Schumacher K, Sánchez-Rodríguez C. (2019)
EMBO J. 2019 Nov 18:e101822.
doi: 10.15252/embj.2019101822.

Supported Solid Lipid Bilayers as a Platform for Single-Molecule Force Measurements.
Sudhakar S, Jachowski TJ, Kittelberger M, Maqbool A, Hermsdorf GL, Abdosamadi MK, Schäffer E. (2019)
Nano Lett. 2019 Nov 26.
doi: 10.1021/acs.nanolett.9b03761.
 

Computational systems biology of cellular processes in Arabidopsis thaliana: an overview.
Holzheu P, Kummer U. (2019)
Cell Mol Life Sci. 2019 Nov 25.
doi: 10.1007/s00018-019-03379-9

A mutant allele uncouples the brassinosteroid-dependent and independent functions of BRASSINOSTEROID INSENSITIVE 1.
Holzwart E, Wanke, F, Glöckner N, Höfte H, Harter K, Wolf S (2019).
Plant Physiology,
doi.org/10.1104/pp.19.00448

Control of flowering in rice through synthetic microProteins.
Eguen T, Ariza JG, Brambilla V, Sun B, Bhati KK, Fornara F, Wenkel S.
J Integr Plant Biol. 2019 Sep 3.
doi: 10.1111/jipb.12865.

Molecular basis for functional diversity among microbial Nep1-like proteins.
Lenarčič T, Pirc K, Hodnik V, Albert I, Borišek J, Magistrato A, Nürnberger T, Podobnik M, Anderluh G.
PLoS Pathog. 2019 Sep 3;15(9):e1007951.
doi: 10.1371/journal.ppat.1007951.

Anion channel SLAH3 is a regulatory target of chitin receptor-associated kinase PBL27 in microbial stomatal closure.
Liu Y, Maierhofer T, Rybak K, Sklenar J, Breakspear A, Johnston MG, Fliegmann J, Huang S, Roelfsema MRG, Felix G, Faulkner C, Menke FL, Geiger D, Hedrich R, Robatzek S.
Elife. 2019 Sep 16;8. pii: e44474.
doi: 10.7554/eLife.44474.

Arabidopsis ITPK1 and ITPK2 Have an Evolutionarily Conserved Phytic Acid Kinase Activity.
Laha D, Parvin N, Hofer A, Giehl RFH, Fernandez-Rebollo N, von Wirén N, Saiardi A, Jessen HJ, Schaaf G.
ACS Chem Biol. 2019 Sep 24.
doi: 10.1021/acschembio.9b00423.

Update on plant cytokinesis: rule and divide.
Buschmann H, Müller S.
Curr Opin Plant Biol. 2019 Sep 19;52:97-105.
doi: 10.1016/j.pbi.2019.07.003.

Structure-Function Analysis of Immune Receptor AtRLP23 with its Ligand nlp20 and Coreceptors AtSOBIR1 and AtBAK1.
Albert I, Zhang L, Bemm H, Nürnberger T.
Mol Plant Microbe Interact. 2019 Jun 24:MPMI09180263R.
doi: 10.1094/MPMI-09-18-0263-R. [Epub ahead of print]

Inducible, Cell Type-Specific Expression in Arabidopsis thaliana Through LhGR-Mediated Trans-Activation.
López-Salmerón V, Schürholz AK, Li Z, Schlamp T, Wenzl C, Lohmann JU, Greb T, Wolf S.
J Vis Exp. 2019 Apr 19;(146).
doi: 10.3791/59394

NMD-based gene regulation - a strategy for fitness enhancement in plants?
Ohtani M, Wachter A.
Plant Cell Physiol. 2019 May 21. pii: pcz090.
doi: 10.1093/pcp/pcz090

Cell Death Triggered by the YUCCA-like Bs3 Protein Coincides with Accumulation of Salicylic Acid and Pipecolic Acid But Not of Indole 3-Acetic Acid
Christina Krönauer, Joachim Kilian, Tina Strauß, Mark Stahl, Thomas Lahaye.
Plant Physiology, July 2019, Vol. 180, pp. 1–13.
10.1104/pp.18.01576

Plant cell division - defining and finding the sweet spot for cell plate insertion.
Müller S.
Curr Opin Cell Biol. 2019 Apr 15;60:9-18.
doi: 10.1016/j.ceb.2019.03.006. [Epub ahead of print] Review.

Constitutive signaling activity of a receptor-associated protein links fertilization with embryonic patterning in Arabidopsis thaliana.
Neu A, Eilbert E, Asseck LY, Slane D, Henschen A, Wang K, Bürgel P, Hildebrandt M, Musielak TJ, Kolb M, Lukowitz W, Grefen C, Bayer M.
Proc Natl Acad Sci U S A. 2019 Mar 19;116(12):5795-5804.
doi: 10.1073/pnas.1815866116. Epub 2019 Mar 4.

NHX-type Na+(K+)/H+ antiporters are required for TGN/EE trafficking and endosomal ion homeostasis in Arabidopsis.
Dragwidge JM, Scholl S, Schumacher K, Gendall AR.
J Cell Sci. 2019 Mar 5. pii: jcs.226472.
doi: 10.1242/jcs.226472. [Epub ahead of print]

Plant cell surface immune receptor complex signaling.
Wan WL, Fröhlich K, Pruitt RN, Nürnberger T, Zhang L.
Curr Opin Plant Biol. 2019 Mar 15;50:18-28.
doi: 10.1016/j.pbi.2019.02.001. [Epub ahead of print] Review.

Specifying the role of BAK1-interacting receptor-like kinase 3 in brassinosteroid signaling.
Großeholz R, Feldman-Salit A, Wanke F, Schulze S, Glöckner N, Kemmerling B, Harter K, Kummer U.
J Integr Plant Biol. 2019 Mar 26.
doi: 10.1111/jipb.12803. [Epub ahead of print]

FT modulates genome-wide DNA-binding of the bZIP transcription factor FD.
Collani S, Neumann M, Yant L, Schmid M.
Plant Physiol. 2019 Feb 15. pii: pp.01505.2018.
doi: 10.1104/pp.18.01505. [Epub ahead of print]

Division Plane Establishment and Cytokinesis.
Livanos P, Müller S.
Annu Rev Plant Biol. 2019 Feb 22.
doi: 10.1146/annurev-arplant-050718-100444. [Epub ahead of print]

High performance passive vibration isolation system for optical tables using six-degree-of-freedom viscous damping combined with steel springs.
Gero L. Hermsdorf, Sven A. Szilagyi, Sebastian Rösch, and Erik Schäffer.
Review of Scientific Instruments, 90, 015113 (2019)
https://doi.org/10.1063/1.5060707

Impact of Alternatively Polyadenylated Isoforms of ETHYLENE RESPONSE FACTOR4 with Activator and Repressor Function on Senescence in Arabidopsis thaliana L.
Riester L, Köster-Hofmann S, Doll J, Berendzen KW, Zentgraf U.
Genes 10(2), 91 (2019)
doi: 10.3390/genes10020091.
https://www.ncbi.nlm.nih.gov/pubmed/?term=30696119

Tug-of-war during senescence.
Zentgraf U.
Nat Plants 5, 129-130 (2019)
doi: 10.1038/s41477-019-0369-0.
https://www.ncbi.nlm.nih.gov/pubmed/?term=30679812

Nitrogen Supply Drives Senescence-Related Seed Storage Protein Expression in Rapeseed Leaves.
Bieker S, Riester L, Doll J, Franzaring J, Fangmeier A, Zentgraf U.
Genes 10(2), 72 (2019)
doi: 10.3390/genes10020072.
https://www.ncbi.nlm.nih.gov/pubmed/?term=30678241

Plant-thickening mechanisms revealed.
Wolf S, Lohmann JU.
Nature. 2019 Jan;565(7740):433-435.
doi: 10.1038/d41586-018-07880-2.
https://www.ncbi.nlm.nih.gov/pubmed/?term=30666055

 

 

2018

 

Microbial effectors and the role of water and sugar in the infection battle ground.
El Kasmi F, Horvath D, Lahaye T.
Curr Opin Plant Biol. 2018 Aug;44:98-107.
doi: 10.1016/j.pbi.2018.02.011.

Live and Let Die: The Core Circadian Oscillator Coordinates Plant Life History and Pilots Leaf Senescence.
Zentgraf, U., Doll, J., Riester, L.
Mol Plant 11, 351-353 (2018)
doi: 10.1016/j.molp.2018.02.001
https://www.ncbi.nlm.nih.gov/pubmed/29458179

Study of Hydrogen Peroxide as a Senescence-Inducing Signal. Methods
Bieker, S., Potschin, M., Zentgraf, U.
Methods Mol Biol 1744, 173-193 (2018)
doi: 10.1007/978-1-4939-7672-0_16
https://www.ncbi.nlm.nih.gov/pubmed/29392667

A guideline for leaf senescence analyses: from quantification to physiological and molecular investigations.
Bresson, J., Bieker, S., Riester, L., Doll, J., Zentgraf, U
J Ex Bot 69, 769-786. (2018)
doi:10.1093/jxb/erx246
https://www.ncbi.nlm.nih.gov/pubmed/?term=28992225

Detecting Interactions of Membrane Proteins: The Split-Ubiquitin System.
Asseck L, Grefen C.
Methods in Molecular Biology, Two-Hybrid Systems, 1794:49-60

The GET pathway can increase the risk of mitochondrial outer membrane proteins to be mistargeted to the ER.
Vitali DG, Sinzel M, Bulthuis EP, Kolb A, Zabel S, Mehlhorn D, Costa BF, Farkas A, Clancy A, Schuldiner M, Grefen C, Schwappach B, Borgese N, Rapaport D.
Journal of Cell Science, early online

ER Membrane Protein Interactions Using the Split-Ubiquitin System (SUS).
Asseck L, Wallmeroth N, Grefen C.
Methods in Molecular Biology, The Plant Endoplasmic Reticulum, 1691:191-203

2in1 Vectors Improve In Planta BiFC and FRET Analyses.
Mehlhorn D, Wallmeroth N, Berendzen KW, Grefen C.
Methods in Molecular Biology, The Plant Endoplasmic Reticulum, 1691:139-158

Gating of miRNA movement at defined cell-cell interfaces governs their impact as positional signals
Damianos S. Skopelitis, Kristine Hill, Simon Klesen, Cristina F. Marco, Patrick von Born,Daniel H. Chitwood & Marja C.P. Timmermans
Nature Communications| (2018) 9:3107
DOI: 10.1038/s41467-018-05571-0
https://www.nature.com/articles/s41467-018-05571-0

A single class of ARF GTPase activated by several pathway-specific ARF-GEFs regulates essential membrane traffic in Arabidopsis.
Singh MK, Richter S, Beckmann H, Kientz M, Stierhof YD, Anders N, Fäßler F, Nielsen M, Knöll C, Thomann A, Franz-Wachtel M, Macek B, Skriver K, Pimpl P, Jürgens G.
PLoS Genet. 2018 Nov 15;14(11):e1007795.
doi: 10.1371/journal.pgen.1007795. eCollection 2018 Nov.
https://www.ncbi.nlm.nih.gov/pubmed/30439956

Three-Dimensional Optical Tweezers Tracking Resolves Random Sideward Steps of the Kinesin-8 Kip3.
Bugiel M, Schäffer E.
Biophys J. 2018 Oct 2. pii: S0006-3495(18)31107-X. doi: 10.1016/j.bpj.2018.09.026. [Epub ahead of print]
PMID: 30360926 [PubMed - as supplied by publisher]
https://www.sciencedirect.com/science/article/abs/pii/S000634951831107X

BRI1 controls vascular cell fate in the Arabidopsis root through RLP44 and phytosulfokine signaling.
Holzwart E, Huerta AI, Glöckner N, Garnelo Gómez B, Wanke F, Augustin S, Askani JC, Schürholz AK, Harter K, Wolf S
Proc Natl Acad Sci U S A. 2018 Oct 30. pii: 201814434. doi: 10.1073/pnas.1814434115. [Epub ahead of print]
PMID: 30377268 [PubMed - as supplied by publisher]
http://www.pnas.org/content/early/2018/10/29/1814434115/tab-article-info

Structural basis of cell wall peptidoglycan amidation by the GatD/MurT complex of Staphylococcus aureus.
Nöldeke ER, Muckenfuss LM, Niemann V, Müller A, Störk E, Zocher G, Schneider T, Stehle T.
Sci Rep. 2018 Aug 28;8(1):12953. doi: 10.1038/s41598-018-31098-x.
PMID: 30154570 [PubMed - in process]
https://www.ncbi.nlm.nih.gov/pubmed/30154570

Arabidopsis RNA processing factor SERRATE regulates the transcription of intronless genes.
Speth C, Szabo EX, Martinho C, Collani S, Zur Oven-Krockhaus S, Richter S, Droste-Borel I, Macek B, Stierhof YD, Schmid M, Liu C, Laubinger S.
Elife. 2018 Aug 28;7. pii: e37078. doi: 10.7554/eLife.37078. [Epub ahead of print]
PMID: 30152752 [PubMed - as supplied by publisher]
https://www.ncbi.nlm.nih.gov/pubmed/30152752

Arabidopsis RUP2 represses UVR8-mediated flowering in noninductive photoperiods.
Arongaus AB, Chen S, Pireyre M, Glöckner N, Galvão VC, Albert A, Winkler JB, Fankhauser C, Harter K, Ulm R.
Genes Dev. 2018 Sep 25. doi: 10.1101/gad.318592.118. [Epub ahead of print]
PMID: 30254107 [PubMed - as supplied by publisher] Free Article
https://www.ncbi.nlm.nih.gov/pubmed/30254107

PORCUPINE regulates development in response to temperature through alternative splicing.
Capovilla G, Delhomme N, Collani S, Shutava I, Bezrukov I, Symeonidi E, de Francisco Amorim M, Laubinger S, Schmid M.
Nat Plants. 2018 Jul 9.
doi: 10.1038/s41477-018-0176-z.
https://www.ncbi.nlm.nih.gov/pubmed/29988152

Arabidopsis thaliana and Pseudomonas Pathogens Exhibit Stable Associations over Evolutionary Timescales.
Karasov TL, Almario J, Friedemann C, Ding W, Giolai M, Heavens D, Kersten S, Lundberg DS, Neumann M, Regalado J, Neher RA, Kemen E, Weigel D.
Cell Host Microbe. 2018 Jul 11;24(1):168-179.e4.
doi: 10.1016/j.chom.2018.06.011.
https://www.ncbi.nlm.nih.gov/pubmed/30001519

Dual localized kinesin-12 POK2 plays multiple roles during cell division and interacts with MAP65-3.
Herrmann A, Livanos P, Lipka E, Gadeyne A, Hauser MT, Van Damme D, Müller S.
EMBO Rep. 2018 Jul 12. pii: e46085.
doi: 10.15252/embr.201846085.
https://www.ncbi.nlm.nih.gov/pubmed/30002118

From signals to stem cells and back again.
Janocha D, Lohmann JU.
Curr Opin Plant Biol. 2018 Jul 4;45(Pt A):136-142.
doi: 10.1016/j.pbi.2018.06.005.
https://www.ncbi.nlm.nih.gov/pubmed/30014888

Phragmoplast Orienting Kinesin 2 Is a Weak Motor Switching between Processive and Diffusive Modes.
Chugh M, Reißner M, Bugiel M, Lipka E, Herrmann A, Roy B, Müller S, Schäffer E.
Biophys J. 2018 Jul 17;115(2):375-385.
doi: 10.1016/j.bpj.2018.06.012.
https://www.ncbi.nlm.nih.gov/pubmed/30021112

A Comprehensive Toolkit for Inducible, Cell Type-Specific Gene Expression in Arabidopsis.
Schürholz AK, Lopez-Salmeron V, Li Z, Forner J, Wenzl C, Gaillochet C, Augustin S, Vilches-Barro A, Fuchs M, Gebert M, Lohmann JU, Greb T, Wolf S.
Plant Physiol. 2018 Jul 19. pii: pp.00463.2018.
doi: 10.1104/pp.18.00463.
https://www.ncbi.nlm.nih.gov/pubmed/30026289

Label-free high-speed wide-field imaging of single microtubules using interference reflection microscopy.
Mahamdeh M, Simmert S, Luchniak A, Schäffer E, Howard J.
J Microsc. 2018 Jul 25.
doi: 10.1111/jmi.12744.
https://www.ncbi.nlm.nih.gov/pubmed/30044498

Approaches to identify and characterize microProteins and their potential uses in biotechnology.
Bhati KK, Blaakmeer A, Paredes EB, Dolde U, Eguen T, Hong SY, Rodrigues V, Straub D, Sun B, Wenkel S.
Cell Mol Life Sci. 2018 Apr 18. doi: 10.1007/s00018-018-2818-8.
https://www.ncbi.nlm.nih.gov/pubmed/29670998

A molecular network for functional versatility of HECATE transcription factors.
Gaillochet C, Jamge S, van der Wal F, Angenent G, Immink R, Lohmann JU.
Plant J. 2018 Apr 18. doi: 10.1111/tpj.13930.
https://www.ncbi.nlm.nih.gov/pubmed/29667268

Auxin and Vesicle Traffic.
Robinson DG, Hawes C, Hillmer S, Jürgens G, Schwechheimer C, Stierhof YD, Viotti C.
Plant Physiol. 2018 Mar;176(3):1884-1888. doi: 10.1104/pp.17.01510.
https://www.ncbi.nlm.nih.gov/pubmed/29630496

Mechanistic basis for the activation of plant membrane receptor kinases by SERK-family coreceptors.
Hohmann U, Santiago J, Nicolet J, Olsson V, Spiga FM, Hothorn LA, Butenko MA, Hothorn M.
Proc Natl Acad Sci U S A. 2018 Mar 27;115(13):3488-3493. doi: 10.1073/pnas.1714972115. Epub 2018 Mar 12.
PMID: 29531026 [PubMed - in process]
https://www.ncbi.nlm.nih.gov/pubmed/29531026

2017

ATP sensing in living plant cells reveals tissue gradients and stress dynamics of energy physiology.
De Col D, Fuchs P, Nietzel T, Elsässer M, Voon CP, Candeo A, Seeliger I, Fricker MD, Grefen C, Møller IM, Bassi A, Lim BL, Zancani M, Meyer AJ, Costa A, Wagner S, Schwarzländer M.
eLife 6:e26770

Loss of GET pathway orthologues in Arabidopsis thaliana causes root hair growth defects and affects SNARE abundance.
Xing S, Mehlhorn D, Wallmeroth N, Asseck L, Kar R, Voss A, Denninger P, Schmidt VAF, Schwarzländer M, Stierhof YD, Grossmann G, Grefen C.
Proc Natl Acad Sci USA 114:E1544–E1553.

Arabidopsis Phospholipase C3 is Involved in Lateral Root Initiation and ABA Responses in Seed Germination and Stomatal Closure.
Zhang Q, van Wijk R, Shahbaz M, Roels W, van Schooten B, Vermeer J, Zarza X, Guardia A, Scuffi D, García-Mata C, Laha D, Williams P, Willems L, Ligterink W, Hoffmann-Benning S, Gillaspy G, Schaaf G, Haring M, Laxalt A, Munnik T.
Plant and Cell Physiology, 2017. doi: 10.1093/pcp/pcx194
Link: https://academic.oup.com/pcp/advance-article/doi/10.1093/pcp/pcx194/4772709

Target Identification and Mechanism of Action of Picolinamide and Benzamide Chemotypes with Antifungal Properties.
Pries V, Nöcker C, Khan D,Johnen P, Hong Z, Tripathi A, Keller AL, Fitz M, Perruccio F, Filipuzzi I, Thavam S, Aust T, Riedl R, Ziegler S, Bono F, Schaaf G, Bankaitis VA, Waldmann H, Hoepfner D.
Cell Chemical Biology. 2017. doi: 10.1016/j.chembiol.2017.12.007
Link: http://www.cell.com/cell-chemical-biology/fulltext/S2451-9456(17)30434-8


A 1-phytase type III effector interferes with plant hormone signaling. Blüher D, Laha D, Thieme S, Hofer A, Eschen-Lippold L, Masch A, Balcke G, Pavlovic I, Nagel O, Schonsky A, Hinkelmann R, Wörner J, Parvin N, Greiner R, Weber S, Tissier A, Schutkowski M, Lee J, Jessen H, Schaaf G, Bonas U. Nat Commun. 2017 Dec 18;8(1):2159. doi: 10.1038/s41467-017-02195-8. PMID: 29255246 [PubMed - in process] Free PMC Article.

Eudicot plant-specific sphingolipids determine host selectivity of microbial NLP cytolysins. Lenarčič T, Albert I, Böhm H, Hodnik V, Pirc K, Zavec AB, Podobnik M, Pahovnik D, Žagar E, Pruitt R, Greimel P, Yamaji-Hasegawa A, Kobayashi T, Zienkiewicz A, Gömann J, Mortimer JC, Fang L, Mamode-Cassim A, Deleu M, Lins L, Oecking C, Feussner I, Mongrand S, Anderluh G, Nürnberger T. Science. 2017 Dec 15;358(6369):1431-1434. doi: 10.1126/science.aan6874. PMID: 29242345 [PubMed - in process]

A role for the F-box protein HAWAIIAN SKIRT in plant microRNA function. Lang PLM, Christie MD, Dogan ES, Schwab R, Hagmann J, Van de Weyer AL, Scacchi E, Weigel D. Plant Physiol. 2017. doi: 10.1104/pp.17.01313. PMID: 29114080

Kinesin rotates unidirectionally and generates torque while walking on microtubules. Ramaiya A, Roy B, Bugiel M, Schäffer E. Proc Natl Acad Sci U S A. 2017;114(41):10894-10899. doi: 10.1073/pnas.1706985114. PMID: 28973906

Contribution of major FLM isoforms to temperature-dependent flowering in Arabidopsis thaliana. Capovilla G, Symeonidi E, Wu R, Schmid M. J Exp Bot. 2017. doi: 10.1093/jxb/erx328. PMID: 29036339

Control of plant cell fate transitions by transcriptional and hormonal signals. Gaillochet C, Stiehl T, Wenzl C, Ripoll JJ, Bailey-Steinitz LJ, Li L, Pfeiffer A, Miotk A, Hakenjos J, Forner J, Yanofsky MF, Marciniak-Czochra A, Lohmann JU. Elife. 2017;6. doi: 10.7554/eLife.30135. PMID: 29058667

Staining and Clearing of Arabidopsis Reproductive Tissue for Imaging of Fluorescent Proteins. Slane D, Bürgel P, Bayer M. Methods Mol Biol. 2017;1669:87-94. doi: 10.1007/978-1-4939-7286-9_8. PMID: 28936652

Evolutionarily diverse SYP1 Qa-SNAREs jointly sustain pollen tube growth in Arabidopsis. Slane D, Reichardt I, El Kasmi F, Bayer M, Jürgens G. Plant J. 2017. doi: 10.1111/tpj.13659. PMID: 28792633

VPS9a Activates the Rab5 GTPase ARA7 to Confer Distinct Pre- and Post-invasive Plant Innate Immunity. Nielsen ME, Jürgens G, Thordal-Christensen H. Plant Cell. 2017. pii: tpc.00859.2016. doi: 10.1105/tpc.16.00859. PMID: 28808134

Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. de Luis Balaguer MA, Fisher AP, Clark NM, Fernandez-Espinosa MG, Möller BK, Weijers D, Lohmann JU, Williams C, Lorenzo O, Sozzani R. Proc Natl Acad Sci USA. 2017. pii: 201707566. doi: 10.1073/pnas.1707566114. PMID: 28827319

Altered chromatin compaction and histone methylation drive non-additive gene expression in an interspecific Arabidopsis hybrid. Zhu W, Hu B, Becker C, Doğan ES, Berendzen KW, Weigel D, Liu C. Genome Biol. 2017;18(1):157. doi: 10.1186/s13059-017-1281-4. PMID: 28830561

The Arabidopsis Leucine-rich Repeat Receptor Kinase BIR3 Negatively Regulates BAK1 Receptor Complex Formation and Stabilizes BAK1. Imkampe J, Halter T, Huang S, Schulze S, Mazzotta S, Schmidt N, Manstretta R, Postel S, Wierzba M, Yang Y, vanDongen WM, Stahl M, Zipfel C, Goshe MB, Clouse S, de Vries SC, Tax F, Wang X, Kemmerling B. Plant Cell. 2017. doi: 10.1105/tpc.17.00376. PMID: 28842532

Prominent topologically associated domains differentiate global chromatin packing in rice from Arabidopsis. Liu C, Cheng YJ, Wang JW, Weigel D. Nat Plants. 2017. doi: 10.1038/s41477-017-0005-9. PMID: 28848243

Multiparameter imaging of calcium and abscisic acid and high-resolution quantitative calcium measurements using R-GECO1-mTurquoise in Arabidopsis. Waadt R, Krebs M, Kudla J, Schumacher K. New Phytol. 2017;216(1):303-320. doi: 10.1111/nph.14706. PMID: 28850185

Developmentally Regulated GTP binding protein 1 (DRG1) controls microtubule dynamics. Schellhaus AK, Moreno-Andrés D, Chugh M, Yokoyama H, Moschopoulou A, De S, Bono F, Hipp K, Schäffer E, Antonin W. Sci Rep. 2017;7(1):9996. doi: 10.1038/s41598-017-10088-5. PMID: 28855639

Analysis of Phragmoplast Kinetics During Plant Cytokinesis. Livanos P, Chugh M, Müller S. Methods Mol Biol. 2017;1662:137-150. doi: 10.1007/978-1-4939-7262-3_12. PMID: 28861824

In Vivo Interaction Studies by Measuring Förster Resonance Energy Transfer Through Fluorescence Lifetime Imaging Microscopy (FRET/FLIM). Fäßler F, Pimpl P. Methods Mol Biol. 2017;1662:159-170. doi: 10.1007/978-1-4939-7262-3_14. PMID: 28861826

Analysis of Nanobody-Epitope Interactions in Living Cells via Quantitative Protein Transport Assays. Früholz S, Pimpl P. Methods Mol Biol. 2017;1662:171-182. doi: 10.1007/978-1-4939-7262-3_15. PMID: 28861827

SPF45-related splicing factor for phytochrome signaling promotes photomorphogenesis by regulating pre-mRNA splicing in Arabidopsis. Xin R, Zhu L, Salomé PA, Mancini E, Marshall CM, Harmon FG, Yanovsky MJ, Weigel D, Huq E. Proc Natl Acad Sci USA. 2017. doi: 10.1073/pnas.1706379114. PMID: 28760995

Perception of root-active CLE peptides requires CORYNE function in the phloem vasculature. Hazak O, Brandt B, Cattaneo P, Santiago J, Rodriguez-Villalon A, Hothorn M, Hardtke CS. EMBO Rep. 2017 Jun 12. doi: 10.15252/embr.201643535. PMID: 28607033

Cell Type-Specific Gene Expression Profiling Using Fluorescence-Activated Nuclear Sorting. Slane D, Bayer M. Methods Mol Biol. 2017;1629:27-35. doi: 10.1007/978-1-4939-7125-1_3. PMID: 28623577

COPASI and its Applications in Biotechnology. Bergmann FT, Hoops S, Klahn B, Kummer U, Mendes P, Pahle J, Sahle S. J Biotechnol. 2017. doi: 10.1016/j.jbiotec.2017.06.1200. PMID: 28655634

ER assembly of SNARE complexes mediating formation of partitioning membrane in Arabidopsis cytokinesis. Karnahl M, Park M, Mayer U, Hiller U, Jürgens G. Elife. 2017;6. doi: 10.7554/eLife.25327. PMID: 28525316

Chlorosis caused by two recessively interacting genes reveals a role of RNA helicase in hybrid breakdown in Arabidopsis thaliana. Plötner B, Nurmi M, Fischer A, Watanabe M, Schneeberger K, Holm S, Vaid N, Schöttler MA, Walther D, Hoefgen R, Weigel D, Laitinen RA. Plant J. 2017. doi: 10.1111/tpj.13560. PMID: 28378460

Activation of a Plant NLR Complex through Heteromeric Association with an Autoimmune Risk Variant of Another NLR. Tran DTN, Chung EH, Habring-Müller A, Demar M, Schwab R, Dangl JL, Weigel D, Chae E. Curr Biol. 2017;27(8):1148-1160. doi: 10.1016/j.cub.2017.03.018. PMID: 28416116

Arabidopsis 14-3-3 epsilon members contribute to polarity of PIN auxin carrier and auxin transport-related development. Keicher J, Jaspert N, Weckermann K, Möller C, Throm C, Kintzi A, Oecking C. Elife. 2017;6. pii: e24336. doi: 10.7554/eLife.24336. PMID: 28422008

Inositol polyphosphate binding specificity of the jasmonate receptor complex. Laha D, Parvin N, Dynowski M, Johnen P, Mao H, Bitters ST, Zheng N, Schaaf G. Plant Physiol. 2017;171:2364. doi: 10.1104/pp.16.00694. PMCID: PMC4972291

The Arabidopsis miR396 mediates pathogen-associated molecular pattern-triggered immune responses against fungal pathogens. Soto-Suárez M, Baldrich P, Weigel D, Rubio-Somoza I, San Segundo B. Sci Rep. 2017;7:44898. doi: 10.1038/srep44898. PMID: 28332603

Cross-species Genome-wide Identification of Evolutionary Conserved MicroProteins. Straub D, Wenkel S. Genome Biol Evol. 2017. doi: 10.1093/gbe/evx041. PMID: 28338802

Chimeric Autofluorescent Proteins as Photophysical Model System for Multicolor Bimolecular Fluorescence Complementation (mcBiFC). Peter S, Zur Oven-Krockhaus S, Veerabagu M, Mira-Rodado V, Berendzen KW, Meixner AJ, Harter K, Schleifenbaum FE. J Phys Chem B. 2017. doi: 10.1021/acs.jpcb.6b11623. PMID: 28240906

Steady-State and Kinetics-Based Affinity Determination in Effector-Effector Target Interactions. Reinhard A, Nürnberger T. Methods Mol Biol. 2017;1578:81-108. doi: 10.1007/978-1-4939-6859-6_7. PMID: 28220417

2016

The shady side of leaf development: the role of the REVOLUTA/KANADI1 module in leaf patterning and auxin-mediated growth promotion. Merelo P, Paredes EB, Heisler MG, Wenkel S. Curr Opin Plant Biol. 2016;35:111-116. doi: 10.1016/j.pbi.2016.11.016. PMID: 27918939

Beyond flexibility: controlling stem cells in an ever changing environment. Pfeiffer A, Wenzl C, Lohmann JU. Curr Opin Plant Biol. 2016;35:117-123. doi: 0.1016/j.pbi.2016.11.014. PMID: 27918940

Alternative Splicing Substantially Diversifies the Transcriptome during Early Photomorphogenesis and Correlates with the Energy Availability in Arabidopsis. Hartmann L, Drewe-Boss P, Wiessner T, Wagner G, Geue S, Lee HC, Obermüller DM, Kahles A, Behr J, Sinz FH, Rätsch G, Wachter A. Plant Cell. 2016;28:2715-2734. PMID: 27803310

Implementation and Tuning of an Optical Tweezers Force-Clamp Feedback System. Bugiel M, Jannasch A, Schäffer E. Methods Mol Biol. 2017;1486:109-136. PMID: 27844427

Custom-Made Microspheres for Optical Tweezers. Jannasch A, Abdosamadi MK, Ramaiya A, De S, Ferro V, Sonnberger A, Schäffer E. Methods Mol Biol. 2017;1486:137-155. PMID: 27844428

The pattern-recognition receptor CORE of Solanaceae detects bacterial cold-shock protein. Wang L, Albert M, Einig E, Fürst U, Krust D, Felix G. Nat Plants. 2016 Nov 28;2:16185. doi: 10.1038/nplants.2016.185. PMID: 27892924

Alternative Splicing Substantially Diversifies the Transcriptome during Early Photomorphogenesis and Correlates with the Energy Availability in Arabidopsis. Hartmann L, Drewe-Boß P, Wießner T, Wagner G, Geue S, Lee HC, Obermüller DM, Kahles A, Behr J, Sinz FH, Rätsch G, Wachter A. Plant Cell. 2016 Nov 1. pii: tpc.00508.2016. PMID: 27803310

Genetic architecture of nonadditive inheritance in Arabidopsis thaliana hybrids. Seymour DK, Chae E, Grimm DG, Martín Pizarro C, Habring-Müller A, Vasseur F, Rakitsch B, Borgwardt KM, Koenig D, Weigel D. Proc Natl Acad Sci U S A. 2016 Nov 1. pii: 201615268. PMID: 27803326

Novel allelic variants in ACD6 cause hybrid necrosis in local collection of Arabidopsis thaliana. Świadek M, Proost S, Sieh D, Yu J, Todesco M, Jorzig C, Rodriguez Cubillos AE, Plötner B, Nikoloski Z, Chae E, Giavalisco P, Fischer A, Schröder F, Kim ST, Weigel D, Laitinen RA. New Phytol. 2016 Sep 2. doi: 10.1111/nph.14155.

A fungal pathogen secretes plant alkalinizing peptides to increase infection. Masachis S, Segorbe D, Turrà D, Leon-Ruiz M, Fürst U, El Ghalid M, Leonard G, López-Berges MS, Richards TA, Felix G, Di Pietro A. Nat Microbiol. 2016 Apr 11;1(6):16043. doi: 10.1038/nmicrobiol.2016.43.

A Versatile Optical Clearing Protocol for Deep Tissue Imaging of Fluorescent Proteins in Arabidopsis thaliana. Musielak TJ, Slane D, Liebig C, Bayer M. PLoS One. 2016 Aug 12;11(8):e0161107. doi: 10.1371/journal.pone.0161107.

Putative RopGAPs impact division plane selection and interact with kinesin-12 POK1. Stöckle D, Herrmann A, Lipka E, Lauster T, Gavidia R, Zimmermann S, Müller S. Nat Plants. 2016 Aug 8;2:16120. doi: 10.1038/nplants.2016.120.

Detection of the plant parasite Cuscuta reflexa by a tomato cell surface receptor. Hegenauer V, Fürst U, Kaiser B, Smoker M, Zipfel C, Felix G, Stahl M, Albert M. Science. 2016 Jul 29;353(6298):478-81. doi: 10.1126/science.aaf3919. PMID: 27471302

Effector Triggered Immune Response in Arabidopsis thaliana Is a Quantitative Trait. Iakovidis M, Teixeira PJ, Exposito-Alonso M, Cowper MG, Law TF, Liu Q, Vu MC, Dang TM, Corwin JA, Weigel D, Dangl JL, Grant SR. Genetics. 2016 Jul 13. pii: genetics.116.190678. PMID: 27412712

Integration of light and metabolic signals for stem cell activation at the shoot apical meristem. Pfeiffer A, Janocha D, Dong Y, Medzihradszky A, Schöne S, Daum G, Suzaki T, Forner J, Langenecker T, Rempel E, Schmid M, Wirtz M, Hell R, Lohmann JU. Elife. 2016 Jul 11;5. pii: e17023. doi: 10.7554/eLife.17023. PMID: 27400267

Linking Separase to Microtubule Dynamics. Müller S. Dev Cell. 2016 May 23;37(4):295-6. doi: 10.1016/j.devcel.2016.05.009. PMID: 27219057

Genome-wide analysis of chromatin packing in Arabidopsis thaliana at single-gene resolution. Liu C, Wang C, Wang G, Becker C, Zaidem M, Weigel D. Genome Res. 2016 May 25. pii: gr.204032.116. [Epub ahead of print] PMID: 27225844

The Effects of High Steady State Auxin Levels on Root Cell Elongation in Brachypodium. Pacheco-Villalobos D, Díaz-Moreno SM, van der Schuren A, Tamaki T, Kang YH, Gujas B, Novak O, Jaspert N, Li Z, Wolf S, Oecking C, Ljung K, Bulone V, Hardtke CS. Plant Cell. 2016 May 11. pii: tpc.01057.2016.

A SAM oligomerization domain shapes the genomic binding landscape of the LEAFY transcription factor. Sayou C, Nanao MH, Jamin M, Posé D, Thévenon E, Grégoire L, Tichtinsky G, Denay G, Ott F, Peirats Llobet M, Schmid M, Dumas R, Parcy F. Nat Commun. 2016 Apr 21;7:11222. doi: 10.1038/ncomms11222. PMID: 27097556

Mechanistic insight into a peptide hormone signaling complex mediating floral organ abscission. Santiago J, Brandt B, Wildhagen M, Hohmann U, Hothorn LA, Butenko MA, Hothorn M. Elife. 2016 Apr 8;5. pii: e15075. doi: 10.7554/eLife.15075. PMID: 27058169

Receptor-mediated sorting of soluble vacuolar proteins ends at the trans-Golgi network/early endosome. Künzl F, Früholz S, Fäßler F, Li B, Pimpl P. Nat Plants. 2016 Mar 7;2:16017. doi: 10.1038/nplants.2016.17. PMID: 27249560

2015

Actin-dependent vacuolar occupancy of the cell determines auxin-induced growth repression. Scheuring D, Löfke C, Krüger F, Kittelmann M, Eisa A, Hughes L, Smith RS, Hawes C, Schumacher K, Kleine-Vehn J. Proc Natl Acad Sci U S A. 2015 Dec 29. pii: 201517445.

Auxin responsiveness of the MONOPTEROS-BODENLOS module in primary root initiation critically depends on the nuclear import kinetics of the Aux/IAA inhibitor BODENLOS. Herud O, Weijers D, Lau S, Jürgens G. Plant J. 2015 Dec 29. doi: 10.1111/tpj.13108.

Kinesin Kip2 enhances microtubule growth <i>in vitro</i> through length-dependent feedback on polymerization and catastrophe. Hibbel A, Bogdanova A, Mahamdeh M, Jannasch A, Storch M, Schäffer E, Liakopoulos D, Howard J. Elife. 2015 Nov 18;4. pii: e10542. doi: 10.7554/eLife.10542.

Job Sharing in the Endomembrane System: Vacuolar Acidification Requires the Combined Activity of V-ATPase and V-PPase. Kriegel A, Andrés Z, Medzihradszky A, Krüger F, Scholl S, Delang S, Patir-Nebioglu MG, Gute G, Yang H, Murphy AS, Peer WA, Pfeiffer A, Krebs M, Lohmann JU, Schumacher K. Plant Cell. 2015 Nov 20. pii: tpc.15.00733.

The rice immune receptor XA21 recognizes a tyrosine-sulfated protein from a Gram-negative bacterium. Pruitt RN, Schwessinger B, Joe A, Thomas N, Liu F, Albert M, Robinson MR, Chan LJ, Luu DD, Chen H, Bahar O, Daudi A, De Vleesschauwer D, Caddell D, Zhang W, Zhao X, Li X, Heazlewood JL, Ruan D, Majumder D, Chern M, Kalbacher H, Midha S, Patil PB, Sonti RV, Petzold CJ, Liu CC, Brodbelt JS, Felix G, Ronald PC. Sci Adv. 2015 Jul 24;1(6):e1500245.

Enzyme-Powered Hollow Mesoporous Janus Nanomotors. Ma X, Jannasch A, Albrecht UR, Hahn K, Miguel-López A, Schäffer E, Sánchez S. Nano Lett. 2015 Oct 14;15(10):7043-50. doi: 10.1021/acs.nanolett.5b03100.

The Elucidation of the Interactome of 16 Arabidopsis bZIP Factors Reveals Three Independent Functional Networks. Llorca CM, Berendzen KW, Malik WA, Mahn S, Piepho HP, Zentgraf U. PLoS One. 2015 Oct 9;10(10):e0139884. doi: 10.1371/journal.pone.0139884.

A simple and versatile cell wall staining protocol to study plant reproduction. Musielak TJ, Schenkel L, Kolb M, Henschen A, Bayer M. Plant Reprod. 2015 Dec;28(3-4):161-9. doi: 10.1007/s00497-015-0267-1.

Gibberellic acid signaling is required for ambient temperature-mediated induction of flowering in Arabidopsis thaliana. Galvão VC, Collani S, Horrer D, Schmid M. Plant J. 2015 Oct 15. doi: 10.1111/tpj.13051.

Profiling of embryonic nuclear vs. cellular RNA in Arabidopsis thaliana. Slane D, Kong J, Schmid M, Jürgens G, Bayer M. Genom Data. 2015 Apr 8;4:96-8. doi: 10.1016/j.gdata.2015.03.015. eCollection 2015 Jun.

The sensor histidine kinases AHK2 and AHK3 proceed into multiple serine/threonine/tyrosine phosphorylation pathways in Arabidopsis thaliana. Dautel R, Wu XN, Heunemann M, Schulze WX, Harter K. Mol Plant. 2015 Oct 17. pii: S1674-2052(15)00397-4. doi: 10.1016/j.molp.2015.10.002.

Modulation of Ambient Temperature-Dependent Flowering in Arabidopsis thaliana by Natural Variation of FLOWERING LOCUS M. Lutz U, Posé D, Pfeifer M, Gundlach H, Hagmann J, Wang C, Weigel D, Mayer KF, Schmid M, Schwechheimer C. PLoS Genet. 2015 Oct 22;11(10):e1005588. doi: 10.1371/journal.pgen.1005588.

Dautel R, Wu XN, Heunemann M, Schulze WX, Harter K (2015). The sensor histidine kinases AHK2 and AHK3 proceed into multiple serine/threonine/tyrosine phosphorylation pathways in Arabidopsis thaliana. Mol Plant, doi: 10.1016/j.molp.2015.10.002.

The Elucidation of the Interactome of 16 Arabidopsis bZIP Factors Reveals Three Independent Functional Networks. Llorca CM, Berendzen KW, Malik WA, Mahn S, Piepho HP, Zentgraf U. PLoS One. 2015 Oct 9;10(10):e0139884. doi: 10.1371/journal.pone.0139884.

Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1 Anja Smykowski, Stefan M. Fischer and Ulrike Zentgraf Plants 2015, 4(3), 691-709; doi:10.3390/plants4030691 - published 16 September 2015

Luo Y, Scholl S, Doering A, Zhang Y, Irani NG, Di Rubbo S, Neumetzler L, Krishnamoorthy P, Van Houtte I, Mylle E, Bischoff V, Vernhettes S, Winne J, Friml J, Stierhof Y-D, Schumacher K, Persson S, Russinova E (2015). V-ATPase activity in the TGN/EE is required for exocytosis and recycling in Arabidopsis. Nature Plants, 15094, doi: 10.1038/NPLANTS.2015.94.

Albert I, Böhm H, Albert M, Feiler CE, Imkampe J, Wallmeroth N, Brancato C, Raaymakers TM, Oome S, Zhang H, Krol E, Grefen C, Gust A, Chai J, Hedrich R, Van den Ackerveken G, Nürnberger T (2015). An RLP23-SOBIR1-BAK1 complex mediates NLP-triggered immunity. Nature Plants, 15140, doi: 10.1038/NPLANTS.2015.140.

"Evolutionarily distant pathogens require the Arabidopsis phytosulfokine signalling pathway to establish disease." Rodiuc N, Barlet X, Hok S, Perfus-Barbeoch L, Allasia V, Engler G, Séassau A, Marteu N, de Almeida-Engler J, Panabières F, Abad P, Kemmerling B, Marco Y, Favery B, Keller H. Plant Cell Environ. 2015 Aug 20. doi: 10.1111/pce.12627.

"Arabidopsis HECATE genes function in phytohormone control during gynoecium development." Schuster C, Gaillochet C, Lohmann JU. Development. 2015 Aug 20. pii: dev.120444.

"A Single-Strand Annealing Protein Clamps DNA to Detect and Secure Homology." Ander M, Subramaniam S, Fahmy K, Stewart AF, Schäffer E. PLoS Biol. 2015 Aug 13;13(8):e1002213. doi: 10.1371/journal.pbio.1002213.

"Meta-analysis of Arabidopsis KANADI1 direct target genes identifies basic growth-promoting module acting upstream of hormonal signaling pathways." Xie Y, Straub D, Eguen T, Brandt R, Stahl M, Martinez-Garcia JF, Wenkel S. Plant Physiol. 2015 Aug 5. pii: pp.00764.2015.

"Identification of OST1-Interacting Proteins Reveals Interactions with SnRK2-Type Protein Kinases and with PP2A-Type Protein Phosphatases that Function in ABA Responses." Waadt R, Manalansan B, Rauniyar N, Munemasa S, Booker MA, Brandt B, Waadt C, Nusinow DA, Kay SA, Kunz HH, Schumacher K, DeLong A, Yates JR, Schroeder JI. Plant Physiol. 2015 Jul 14. pii: pp.00575.2015.

"A new model for the aerobic metabolism of yeast allows the detailed analysis of the metabolic regulation during glucose pulse." Kesten D, Kummer U, Sahle S, Hübner K. Biophys Chem. 2015 Jul 4;206:40-57. doi: 10.1016/j.bpc.2015.06.010.

"Genome Wide Binding Site Analysis Reveals Transcriptional Coactivation of Cytokinin-Responsive Genes by DELLA Proteins." Marín-de la Rosa N, Pfeiffer A, Hill K, Locascio A, Bhalerao RP, Miskolczi P, Grønlund AL, Wanchoo-Kohli A, Thomas SG, Bennett MJ, Lohmann JU, Blázquez MA, Alabadí D. PLoS Genet. 2015 Jul 2;11(7):e1005337. doi: 10.1371/journal.pgen.1005337.

"Phytosulfokine Regulates Growth in Arabidopsis through a Response Module at the Plasma Membrane That Includes CYCLIC NUCLEOTIDE-GATED CHANNEL17, H+-ATPase, and BAK1." Ladwig F, Dahlke RI, Stührwohldt N, Hartmann J, Harter K, Sauter M. Plant Cell. 2015 Jun 12. pii: tpc.15.00306.

"The Arabidopsis GAGA-binding factor BPC6 recruits PRC1 component LHP1 to GAGA DNA-motifs." Hecker A, Brand LH, Peter S, Simoncello N, Kilian J, Harter K, Gaudin V, Wanke D. Plant Physiol. 2015 May 29. pii: pp.00409.2015.

"Live cell imaging with R-GECO1 sheds light on flg22- and chitin-induced transient [Ca2+]cyt patterns in Arabidopsis." Keinath N, Waadt R, Brugman R, Schroeder JI, Grossmann G, Schumacher K, Krebs M. Mol Plant. 2015 May 19. pii: S1674-2052(15)00239-7. doi: 10.1016/j.molp.2015.05.006.

"Binary 2in1 vectors improve in planta (co-) localisation and dynamic protein interaction studies." Hecker A, Wallmeroth N, Peter S, Blatt MR, Harter K, Grefen C. Plant Physiol. 2015 May 13. pii: pp.00533.2015.

"An overdose of the Arabidopsis coreceptor BAK1 or its ectodomain causes autoimmunity in a SOBIR1-dependent manner." Domínguez-Ferreras A, Kiss-Papp M, Jehle AK, Felix G, Chinchilla D. Plant Physiol. 2015 May 5. pii: pp.00537.2015.

"VIH2 Regulates the Synthesis of Inositol Pyrophosphate InsP8 and Jasmonate-Dependent Defenses in Arabidopsis." Laha D, Johnen P, Azevedo C, Dynowski M, Weiß M, Capolicchio S, Mao H, Iven T, Steenbergen M, Freyer M, Gaugler P, de Campos MK, Zheng N, Feussner I, Jessen HJ, Van Wees SC, Saiardi A, Schaaf G. Plant Cell . 2015 Apr 21. pii: tpc.114.135160.

"The Kinesin-8 kip3 switches protofilaments in a sideward random walk asymmetrically biased by force." Bugiel M, Böhl E, Schäffer E. Biophys J. 2015 Apr 21;108(8):2019-27. doi: 10.1016/j.bpj.2015.03.022.

"PKC-mediated inhibitory feedback of the cholecystokinin 1 receptor controls the shape of oscillatory Ca2+ signals." Willems PH, Pahle J, Stalpers XL, Mugahid D, Nikolaew A, Koopman WJ, Kummer U. FEBS J. 2015 Mar 17. doi: 10.1111/febs.13267.

"Sec14-Nodulin Proteins And The Patterning of Phosphoinositide Landmarks For Developmental Control of Membrane Morphogenesis." Ghosh R, de Campos MK, Huang J, Huh SK, Orlowski A, Yang Y, Tripathi A, Nile A, Lee HC, Dynowski M, Schäfer H, Róg T, Lete MG, Ahyayauch H, Alonso A, Vattulainen I, Igumenova TI, Schaaf G, Bankaitis VA. Mol Biol Cell. 2015 Mar 4. pii: mbc.E14-10-1475.

"A quantitative and dynamic model of the Arabidopsis flowering time gene regulatory network." Leal Valentim F, Mourik Sv, Posé D, Kim MC, Schmid M, van Ham RC, Busscher M, Sanchez-Perez GF, Molenaar J, Angenent GC, Immink RG, van Dijk AD. PLoS One. 2015 Feb 26;10(2):e0116973. doi: 10.1371/journal.pone.0116973.

2014

REVOLUTA and WRKY53 connect early and late leaf development in Arabidopsis. Xie Y, Huhn K, Brandt R, Potschin M, Bieker S, Straub D, Doll J, Drechsler T, Zentgraf U, Wenkel S. Development. 2014 Dec;141(24):4772-83. doi: 10.1242/dev.117689.

"Knowing your friends and foes - plant receptor-like kinases as initiators of symbiosis or defence." Antolín-Llovera M, Petutsching EK, Ried MK, Lipka V, Nürnberger T, Robatzek S, Parniske M.New Phytol. 2014 Dec;204(4):791-802. doi: 10.1111/nph.13117.

"Twin Plants from Supernumerary Egg Cells in Arabidopsis." Kong J, Lau S, Jürgens G. Curr Biol. 2014 Dec 23. pii: S0960-9822(14)01482-1. doi: 10.1016/j.cub.2014.11.021.

"Analysis of a plant complex resistance gene locus underlying immune-related hybrid incompatibility and its occurrence in nature." Alcázar R, von Reth M, Bautor J, Chae E, Weigel D, Koornneef M, Parker JE. PLoS Genet. 2014 Dec 11;10(12):e1004848. doi: 10.1371/journal.pgen.1004848.

"Species-wide Genetic Incompatibility Analysis Identifies Immune Genes as Hot Spots of Deleterious Epistasis." Chae E, Bomblies K, Kim ST, Karelina D, Zaidem M, Ossowski S, Martín-Pizarro C, Laitinen RA, Rowan BA, Tenenboim H, Lechner S, Demar M, Habring-Müller A, Lanz C, Rätsch G, Weigel D. Cell. 2014 Dec 4;159(6):1341-51. doi: 10.1016/j.cell.2014.10.049.

"Biology of a widespread uncultivated archaeon that contributes to carbon fixation in the subsurface." Probst AJ, Weinmaier T, Raymann K, Perras A, Emerson JB, Rattei T, Wanner G, Klingl A, Berg IA, Yoshinaga M, Viehweger B, Hinrichs KU, Thomas BC, Meck S, Auerbach AK, Heise M, Schintlmeister A, Schmid M, Wagner M, Gribaldo S, Banfield JF, Moissl-Eichinger C. Nat Commun. 2014 Nov 26;5:5497. doi: 10.1038/ncomms6497.

"Nep1-like proteins from three kingdoms of life act as a microbe-associated molecular pattern in Arabidopsis." Oome S, Raaymakers TM, Cabral A, Samwel S, Böhm H, Albert I, Nürnberger T, Van den Ackerveken G. Proc Natl Acad Sci U S A. 2014 Nov 25;111(47):16955-60. doi: 10.1073/pnas.1410031111.

"Cell type-specific transcriptome analysis in the early Arabidopsis thaliana embryo." Slane D, Kong J, Berendzen KW, Kilian J, Henschen A, Kolb M, Schmid M, Harter K, Mayer U, De Smet I, Bayer M, Jürgens G. Development. 2014 Nov 19. pii: dev.116459.

"Temporal Control of Leaf Complexity by miRNA-Regulated Licensing of Protein Complexes." Rubio-Somoza I, Zhou CM, Confraria A, Martinho C, von Born P, Baena-Gonzalez E, Wang JW, Weigel D. Curr Biol. 2014 Nov 17;24(22):2714-9. doi: 10.1016/j.cub.2014.09.058.

"A conserved Peptide pattern from a widespread microbial virulence factor triggers pattern-induced immunity in Arabidopsis." Böhm H, Albert I, Oome S, Raaymakers TM, Van den Ackerveken G, Nürnberger T. PLoS Pathog. 2014 Nov 6;10(11):e1004491. doi: 10.1371/journal.ppat.1004491.

"Genome-wide analysis of local chromatin packing in Arabidopsis thaliana." Wang C, Liu C, Roqueiro D, Grimm D, Schwab R, Becker C, Lanz C, Weigel D. Genome Res. 2014 Nov 3. pii: gr.170332.113.

Halter T, Imkampe J, Mazzotta S, Wierzba M, Postel S, Bücherl C, Kiefer C, Stahl M, Chinchilla D, Wang X, Nürnberger T, Zipfel C, Clouse S, Borst J W, Boeren S, de Vries S C, Tax F, Kemmerling B. "The leucine-rich repeat receptor kinase BIR2 is a negative regulator of BAK1 in plant immunity." Current Biology 24.2 (2014): 134-143. Download

Blaum B S, Mazzotta S, Nöldeke E R, Halter T, Madlung J, Kemmerling B, Stehle T. "Structure of the pseudokinase domain of BIR2, a regulator of BAK1-mediated immune signaling in Arabidopsis." Journal of structural biology 186.1 (2014): 112-121. Download

Petutschnig E K, Stolze M, Lipka U, Kopischke M, Horlacher J, Valerius O, Rozhon W, Gust A A, Kemmerling B, Poppenberger B, Braus G H, Nürnberger T, Lipka V. "A novel Arabidopsis CHITIN ELICITOR RECEPTOR KINASE 1 (CERK1) mutant with enhanced pathogen‐induced cell death and altered receptor processing." New Phytologist 204.4 (2014): 955-967. Download

Lipka E, Gadeyne A, Stöckle D, Zimmermann S, De Jaeger G , Ehrhardt D W, Kirik V, Van Damme D, Müller S. "The Phragmoplast-Orienting Kinesin-12 Class Proteins Translate the Positional Information of the Preprophase Band to Establish the Cortical Division Zone in Arabidopsis thaliana." The Plant Cell Online 26.6 (2014): 2617-2632. Download

Singh M K, Krüger F, Beckmann H, Brumm S, Vermeer J E M, Munnik T, Mayer U, Stierhof Y-D, Grefen C, Schumacher K, Jürgens G. "Protein Delivery to Vacuole Requires SAND Protein-Dependent Rab GTPase Conversion for MVB-Vacuole Fusion." Current Biology 24.12 (2014): 1383-1389. Download

Wolf S, van der Does D, Ladwig F, Sticht C, Kolbeck A, Schürholz AK, Augustin S, Keinath N, Rausch T, Greiner S, Schumacher K, Harter K, Zipfel C, Höfte H (2014). A receptor-like protein mediates the response to pectin modification by activating brassinosteroid signaling. Proc Natl Acad Sci USA 111:15261-15262. Download

Veerabagu M, Kirchler T, Haible K, Elgass K, Harter K, Mira-Rodado V, Chaban C (2014). The type-B response regulator ARR18 mediates osmotic stress responses through direct interaction with bZIP transcription factors. Mol Plant, doi:10.1093/mp/ssu074. Download



Reviews

2017

Editorial overview: Membrane dynamics-being at the right place at the right time. Russinova E, Schumacher K. Curr Opin Plant Biol. 2017. doi: 10.1016/j.pbi.2017.10.004. PMID: 29129464

Specificity of plant membrane trafficking - ARFs, regulators and coat proteins. Singh MK, Jürgens G. Semin Cell Dev Biol. 2017. doi: 10.1016/j.semcdb.2017.10.005. PMID: 29024759

The regulation of cell polarity by lipid transfer proteins of the SEC14 family. Kaphan Freitas de Campos M, Schaaf G. Curr Opin Plant Biol. 2017;40:158-168. doi: 10.1016/j.pbi.2017.09.007. PMID: 29017091

Pumping up the volume - vacuole biogenesis in Arabidopsis thaliana. Krüger F, Schumacher K. Semin Cell Dev Biol. 2017. doi: 10.1016/j.semcdb.2017.07.008. Review. PMID: 28694113

Growth and development: Change is in the air: how plants modulate development in response to the environment. Ahn JH, Schmid M. Curr Opin Plant Biol. 2017. doi: 10.1016/j.pbi.2017.01.003. PMID: 28162929

2016

Early plant embryogenesis-dark ages or dark matter? Bayer M, Slane D, Jürgens G. Curr Opin Plant Biol. 2016 Oct 31;35:30-36. doi: 10.1016/j.pbi.2016.10.004. PMID: 27810634

Plant Stem Cells. Greb T, Lohmann JU. Curr Biol. 2016 Sep 12;26(17):R816-21. doi: 10.1016/j.cub.2016.07.070. PMID: 27623267

Immunity: Flagellin seen from all sides. Fliegmann J, Felix G. Nat Plants. 2016 Sep 6;2(9):16136. doi: 10.1038/nplants.2016.136. PMID: 27595659

2015

Plant cytokinesis-No ring, no constriction but centrifugal construction of the partitioning membrane. Müller S, Jürgens G. Semin Cell Dev Biol. 2015 Oct 31. pii: S1084-9521(15)00244-X. doi: 10.1016/j.semcdb.2015.10.037.

"Plant Intracellular Transport: Tracing Functions of the Retrograde Kinesin." Müller S. Curr Biol. 2015 Sep 21;25(18):R808-10. doi: 10.1016/j.cub.2015.08.011.

"Chromatin in 3D: progress and prospects for plants." Liu C, Weigel D. Genome Biol. 2015 Aug 21;16(1):170. doi: 10.1186/s13059-015-0738-6.

"Role of alternative pre-mRNA splicing in temperature signaling." Capovilla G, Pajoro A, Immink RG, Schmid M. Curr Opin Plant Biol. 2015 Jul 16;27:97-103. doi: 10.1016/j.pbi.2015.06.016.

"The never-ending story: from pluripotency to plant developmental plasticity." Gaillochet C, Lohmann JU. Development. 2015 Jul 1;142(13):2237-49. doi: 10.1242/dev.117614.

"MicroProteins: small size - big impact." Eguen T, Straub D, Graeff M, Wenkel S. Trends Plant Sci. 2015 Jun 23. pii: S1360-1385(15)00140-5. doi: 10.1016/j.tplants.2015.05.011.

2014

"O Cell, Where Art Thou? The mechanisms of shoot meristem patterning." Gaillochet C, Daum G, Lohmann JU. Curr Opin Plant Biol. 2014 Nov 25;23C:91-97. doi: 10.1016/j.pbi.2014.11.002.

Wachter, A. (2014). Gene regulation by structured mRNA elements. Trends in Genetics, 30(5), 172-181. Download

Musielak, Thomas J., and Martin Bayer. "YODA signalling in the early Arabidopsis embryo." Biochemical Society transactions 42.2 (2014): 408-412. Download

Llorca C M, Potschin M, Zentgraf U. (2014) bZIPs and WRKYs: two large transcription factor families executing two different functional strategies. Frontiers of plant science 5, Article 169. Download